Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1775 ATGGATTTTCTCTCCTCCAGAAAACTCCTCTCAGACGACGAAGACCTCAAGAAATCCTGCAAAGACTGCCTCGATTCCCTTACCGATTCTTGCTCTTCTGATTGCATCGAAAAATGCCGAAATTTCTGCTATATCTCAATTCCAATCCCATCGCCCGTCTCAAAATCGCATCATAAACTCTCCAATTTGGTCACCTCCACCATCGCCGTACTCTCCTTCACCTTCCTCCTCGTCCTCTGTTACGCTATATACGCCCGTTTCTACTCCGGCCGCCGCAGACGGATTCGCCGCGCCGATGCTCCACCGCCCGCGACTCATCACCAGGATGAGTTTCTCGATGAAGAACAGGGCCCTGTTTTGGATCACCCCATTTGGTACATCCGCACCGTCGGCCTCCCGCTGTCCGTCATCGAGGCTATCGCCGTCTGCAAGTTTAAATCCGGTGAGGGTTTGATCGATGGAACAGAGTGCTCTGTTTGTTTGAGCGAATTTGAAGAGGATGAAACCTTGAGGCTTTTGCCAAAGTGTAGCCACGCTTTTCATCTCCCCTGTATTGACACTTGGCTTCGATCTCACACCAATTGCCCCATGTGCCGCGCTCCTGTTGTAGCTCAGTCCACCGCCGCCGCGGCTCCGCCACCGCCGCCGCCTCCGGTGGAAACCCAGATGGGGGATTCGCAGAGGGAAGAGGGAAATGGAGCCAATTTTGGGGAAAGTTCAGTTAGAAATGAACAACAAGAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATCCATTTTCCTGATGAAGATTTAGAAGAAAGAAGTAGTGATATTCAGCCAGTGAGAAGATCTGTATCACTAGATTCTTTATCAGCTCTTAGAATCAGCTCAGTTTTTTCTGGTGTTAATGAAAAAATGGACTCTGAAGCTGAATCAATGCAGAGAAATGGGAATGGTTTGAAGAAATCATCACAAGGGAGAGGCAATTCTTCATCTGCCATGAACAGGTCAGTTTCTTGCAGTGGGAAGTTCCTAATGAGAAGCACCACTCAGAGAAGTCATGGAACTAATCACAGTTGA 1068 48.41 MDFLSSRKLLSDDEDLKKSCKDCLDSLTDSCSSDCIEKCRNFCYISIPIPSPVSKSHHKLSNLVTSTIAVLSFTFLLVLCYAIYARFYSGRRRRIRRADAPPPATHHQDEFLDEEQGPVLDHPIWYIRTVGLPLSVIEAIAVCKFKSGEGLIDGTECSVCLSEFEEDETLRLLPKCSHAFHLPCIDTWLRSHTNCPMCRAPVVAQSTAAAAPPPPPPPVETQMGDSQREEGNGANFGESSVRNEQQEQEEEEEEEEEEEIHFPDEDLEERSSDIQPVRRSVSLDSLSALRISSVFSGVNEKMDSEAESMQRNGNGLKKSSQGRGNSSSAMNRSVSCSGKFLMRSTTQRSHGTNHS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30362491 30363558 - CcPI632755_09g017750.1 Cco09g1775 188232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1775 355 SUPERFAMILY RING/U-box 151 205 - -
Cco09g1775 355 MobiDBLite consensus disorder prediction 225 242 - -
Cco09g1775 355 Pfam Ring finger domain 156 199 IPR001841 -
Cco09g1775 355 PANTHER RING-H2 FINGER PROTEIN ATL16 49 340 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cco09g1775 355 SMART ring_2 157 198 IPR001841 -
Cco09g1775 355 MobiDBLite consensus disorder prediction 276 299 - -
Cco09g1775 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 208 IPR013083 -
Cco09g1775 355 MobiDBLite consensus disorder prediction 245 264 - -
Cco09g1775 355 MobiDBLite consensus disorder prediction 207 355 - -
Cco09g1775 355 Coils Coil 238 261 - -
Cco09g1775 355 CDD RING-H2_EL5-like 156 199 - -
Cco09g1775 355 FunFam RING-H2 finger protein ATL54 132 205 - -
Cco09g1775 355 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Cco09g1775 355 MobiDBLite consensus disorder prediction 308 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1775 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1618 Cco-Chr4:31481576 Cco09g1775 Cco-Chr9:30362491 8.00E-37 dispersed
Cco09g1187 Cco-Chr9:11805039 Cco09g1775 Cco-Chr9:30362491 1.60E-39 dispersed
Cco09g1775 Cco-Chr9:30362491 Cco11g1306 Cco-Chr11:25687463 2.80E-17 dispersed
Cco09g1775 Cco-Chr9:30362491 Cco08g1286 Cco-Chr8:24634433 7.50E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g981 . . . . . . . . . Cmo11g01477 . . . . Sed10g1872 Cpe04g00372 Cpe15g00366 Bhi05g00901 Tan02g1189 Cmetu01g2487 Lac12g0060 Hepe02g0730 . . . . . . . . . . . . . Lsi03g00730 . . . . . Bda15g00493 . . . . . . . . Cma11g01659 Cma19g00468 Car11g01180 Car19g00344 . . . . . . . . . Cla09g01565 Cam09g1596 Cec09g1718 Cco09g1775 . . Cre09g1612 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011597 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 29