Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1794 ATGGACCACAACGGCGGCGGCGGGAATAGGGCGGAGGCGTTGCGGTGGTTGAGCATAGCGGAGAAGCTTTTGGCGGCGCGTGACTTTTATGGAACTAGGAGCTTTGCGATCCGGGCGAGGGAATCGGACCCCATAGTGTTGGAGGCGGCGGACAGGGTAATTGCCGTCGCGGATACACTCCTGGCGGCGGAGGGACGGATCAACAATCAGTATGACTGGTATAGTATTTTGCAAATTTCGCAGCCGACTCAGAGCATTGAGCTAATCGCAACTCAGTATCGGCGACTGGCGCTTCTTCTTCACCCGGAGGCTAACAGAGTCGCGTTTGCGGATCACGCTTTCAGGCTTGTTTCTGATGCATGGTGTGTGCTTTCGAATCCGTTGAGAAAAGCTTTGTATGATAACGATTACCTTATGTGCTCCAAGTTTAGCCCTGGAACGACTGGGTCGAGTCAAAAACCGAAGTCCCCGCCGCAGCATCCTCAATTTCCGCAGCCTGTTAGAACTAGTCCTAGGAAGGAGACTAGGATGACGGTAGAGGAGCCTCAGCATCAGGAACGGCCACCGCCACCGCCACCGCCGGAACGCCCGCAGCCGCCACCGCCACAACCACCGGCGCAGCCACAGCAACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACAGCCACCACCTCCTCAACCGTCTCCTCACCGGCCACAGCAGCAAGAGGATCCGCAGCAGCAGCAGCAGCAGCTGCAATTTGTAAGAAAAACCCCCAAATCGATGAATGCTAAAGTAACCGTAGAAGAGAGGCCAAATGTCAGTGATGTCAATGAGTCAACTCAGGAAGCGACTCAGCAGCAAATTGATTCCAATCAGCCCTCCCGGGAGACTGAGTCTACTTTACCGACTGAGTCTACTTTGCCGACTGAGTCGAGCATTCCGAGTTTCTGGACTGCTTGTCCATACTGTTATAATCTCTACGAGTACCCTAAGGGTTACGAGGATTGTGTGCTTAGGTGCCAGAATTGTGCTAAGGCATTTCAAGCATTGGTTATTCCTTCACCACCGGTAGCTGAAGGCGCTTCTACATTCTGTTGCTGGGGGTTTTTCCCACTTGGGGTTTCTCCCAATGCTAAAGGGGCAACGGGGTCTGTAGCCTGGTCGCCCTTTTCAGCTATGTTTTCCTGTCCTTTGCCTGGTAAGGAGGCAACAAAATCGGGGAAAACTAGAAATGTTAAACCCGCCAAGAAATCTACACCAAGATTTATTTGTGAAGAGGATGATATTTATGTCGAAGTCTCAGAACCGAGTGACAGTTCTGATGAAGAGTGGGGAAGGATAAGTAAGAAGAAGAAGCCTAAGAGGGGTTTGGCTAGTAGAATTGATAAGAGAGTACATTCTGAGAGCCCACTGAAAGGGAACCAAGGAAATGTAGGGAATGGAAATACAGATGAAGTTGAGAATATGAATGGGCAGTTTGGAGAACAAAATGGGTTGGTTCGGTTCGGTTTGTCAAACTCCACAAAGGGTGAGTCCAGTAAGAAGGCTGTGGCAGCCGCAGGGGGTACTGGGAAGAAGCATAAAGGGAAAGGACCAAAGGAGCTAGGGAAGTTAGATTTGAATGTGGAATTCAGCAATGAGGTGGAAGAACCTGCCGCAGGTTTAGTAAGGCTCTTGGATGTTATTCTTAACGAACACGTAGAATTTGTAGTATTCCAGGAGAAAGCATTCTATTGA 1755 51.0 MDHNGGGGNRAEALRWLSIAEKLLAARDFYGTRSFAIRARESDPIVLEAADRVIAVADTLLAAEGRINNQYDWYSILQISQPTQSIELIATQYRRLALLLHPEANRVAFADHAFRLVSDAWCVLSNPLRKALYDNDYLMCSKFSPGTTGSSQKPKSPPQHPQFPQPVRTSPRKETRMTVEEPQHQERPPPPPPPERPQPPPPQPPAQPQQQPQPQPQPQPQPQPQPQPQPQPQPPPPQPSPHRPQQQEDPQQQQQQLQFVRKTPKSMNAKVTVEERPNVSDVNESTQEATQQQIDSNQPSRETESTLPTESTLPTESSIPSFWTACPYCYNLYEYPKGYEDCVLRCQNCAKAFQALVIPSPPVAEGASTFCCWGFFPLGVSPNAKGATGSVAWSPFSAMFSCPLPGKEATKSGKTRNVKPAKKSTPRFICEEDDIYVEVSEPSDSSDEEWGRISKKKKPKRGLASRIDKRVHSESPLKGNQGNVGNGNTDEVENMNGQFGEQNGLVRFGLSNSTKGESSKKAVAAAGGTGKKHKGKGPKELGKLDLNVEFSNEVEEPAAGLVRLLDVILNEHVEFVVFQEKAFY 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30711100 30713835 + CcPI632755_09g017940.1 Cco09g1794 188251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1794 584 Pfam DnaJ domain 72 134 IPR001623 -
Cco09g1794 584 MobiDBLite consensus disorder prediction 184 244 - -
Cco09g1794 584 ProSiteProfiles dnaJ domain profile. 72 137 IPR001623 -
Cco09g1794 584 Gene3D DnaJ domain 68 137 IPR036869 -
Cco09g1794 584 MobiDBLite consensus disorder prediction 278 317 - -
Cco09g1794 584 SMART dnaj_3 71 129 IPR001623 -
Cco09g1794 584 MobiDBLite consensus disorder prediction 512 541 - -
Cco09g1794 584 CDD DnaJ 72 126 IPR001623 -
Cco09g1794 584 MobiDBLite consensus disorder prediction 440 489 - -
Cco09g1794 584 SUPERFAMILY Chaperone J-domain 66 135 IPR036869 -
Cco09g1794 584 MobiDBLite consensus disorder prediction 146 317 - -
Cco09g1794 584 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 7 557 IPR053052 -
Cco09g1794 584 MobiDBLite consensus disorder prediction 245 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1794 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1794 Cco-Chr9:30711100 Cco10g0132 Cco-Chr10:1209088 6.40E-11 dispersed
Cco09g1794 Cco-Chr9:30711100 Cco11g1504 Cco-Chr11:27861368 1.80E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g955 . . . . . . . Bma12g00378 Cmo19g00493 Cmo11g01464 . . . . . Cpe04g00370 Cpe15g00374 Bhi05g00935 . . . . . . . . . . . . . . . . . . . . Cme01g00203 . . Bda15g00491 . . . . . . . . Cma11g01667 Cma19g00476 Car11g01178 Car19g00351 . . . . . . . . . Cla09g01575 Cam09g1578 Cec09g1732 Cco09g1794 . . Cre09g1623 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008143 2 1 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 1 0 34