Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1803 ATGCCGGACTCCAATTTCCAAGACACGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACAGAGTTGGCGATGAAGATGACGACATTAACGGCGGGGAAGAGTCGATAGATAATCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATGAACCGAGTCCAGGACGTTGTTCCTGCGACGTATGTTTCCAGCTCTGATTACAACCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTGTCACCGGACAAGGTGCAAGCGGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCATCAACCAGCAGGGTACCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCATTGAGTAGATTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAGTGTGCGAAAAGAAGTTGCGCTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCCATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACACATTGTGGAATCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGGCCAAGGACTCTATGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATCTTGAGGGATCTTTCCAAGGTTTCAAACACTGGCATCCAAGAACCCTCTGCGAAAGAGACTGAACAGAGCGACGGCGAAGCTGCTAATGAATCTGATGCTGCAATTAATGTGGATATTCTCACTTCTAATGGTGATAAATAG 924 47.94 MPDSNFQDTMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVMNRVQDVVPATYVSSSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPINQQGTDGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIQEPSAKETEQSDGEAANESDAAINVDILTSNGDK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30934741 30940518 + CcPI632755_09g018030.1 Cco09g1803 188260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1803 307 MobiDBLite consensus disorder prediction 267 307 - -
Cco09g1803 307 MobiDBLite consensus disorder prediction 1 58 - -
Cco09g1803 307 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g1803 307 PANTHER GATA TRANSCRIPTION FACTOR 28 38 299 IPR045280 GO:0006355(InterPro)
Cco09g1803 307 MobiDBLite consensus disorder prediction 1 24 - -
Cco09g1803 307 Gene3D - 221 286 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco09g1803 307 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cco09g1803 307 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g1803 307 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Cco09g1803 307 CDD ZnF_GATA 224 274 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g1803 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Cco09g1803 307 SMART tify_2 86 121 IPR010399 -
Cco09g1803 307 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Cco09g1803 307 Pfam tify domain 90 120 IPR010399 -
Cco09g1803 307 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g1803 307 SMART GATA_3 219 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1314 Cco-Chr8:25001798 Cco09g1803 Cco-Chr9:30934741 8.10E-61 dispersed
Cco09g0161 Cco-Chr9:1435788 Cco09g1803 Cco-Chr9:30934741 3.80E-56 dispersed
Cco09g1803 Cco-Chr9:30934741 Cco01g1797 Cco-Chr1:30671175 3.30E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59987 PF06203 CCT 1.60E-15 CL0281 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1803 - - - 0.0