Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g1803 | ATGCCGGACTCCAATTTCCAAGACACGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACAGAGTTGGCGATGAAGATGACGACATTAACGGCGGGGAAGAGTCGATAGATAATCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATGAACCGAGTCCAGGACGTTGTTCCTGCGACGTATGTTTCCAGCTCTGATTACAACCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTGTCACCGGACAAGGTGCAAGCGGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCATCAACCAGCAGGGTACCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCATTGAGTAGATTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAGTGTGCGAAAAGAAGTTGCGCTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCCATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACACATTGTGGAATCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGGCCAAGGACTCTATGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATCTTGAGGGATCTTTCCAAGGTTTCAAACACTGGCATCCAAGAACCCTCTGCGAAAGAGACTGAACAGAGCGACGGCGAAGCTGCTAATGAATCTGATGCTGCAATTAATGTGGATATTCTCACTTCTAATGGTGATAAATAG | 924 | 47.94 | MPDSNFQDTMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVMNRVQDVVPATYVSSSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPINQQGTDGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIQEPSAKETEQSDGEAANESDAAINVDILTSNGDK | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 30934741 | 30940518 | + | CcPI632755_09g018030.1 | Cco09g1803 | 188260 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g1803 | 307 | MobiDBLite | consensus disorder prediction | 267 | 307 | - | - | |
Cco09g1803 | 307 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Cco09g1803 | 307 | ProSiteProfiles | GATA-type zinc finger domain profile. | 224 | 276 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g1803 | 307 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 38 | 299 | IPR045280 | GO:0006355(InterPro) | |
Cco09g1803 | 307 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cco09g1803 | 307 | Gene3D | - | 221 | 286 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cco09g1803 | 307 | ProSiteProfiles | Tify domain profile. | 86 | 121 | IPR010399 | - | |
Cco09g1803 | 307 | Pfam | GATA zinc finger | 225 | 260 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g1803 | 307 | ProSiteProfiles | CCT domain profile. | 153 | 195 | IPR010402 | GO:0005515(InterPro) | |
Cco09g1803 | 307 | CDD | ZnF_GATA | 224 | 274 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g1803 | 307 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 222 | 271 | - | - | |
Cco09g1803 | 307 | SMART | tify_2 | 86 | 121 | IPR010399 | - | |
Cco09g1803 | 307 | Pfam | CCT motif | 153 | 195 | IPR010402 | GO:0005515(InterPro) | |
Cco09g1803 | 307 | Pfam | tify domain | 90 | 120 | IPR010399 | - | |
Cco09g1803 | 307 | ProSitePatterns | GATA-type zinc finger domain. | 225 | 252 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g1803 | 307 | SMART | GATA_3 | 219 | 272 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1314 | Cco-Chr8:25001798 | Cco09g1803 | Cco-Chr9:30934741 | 8.10E-61 | dispersed | |
Cco09g0161 | Cco-Chr9:1435788 | Cco09g1803 | Cco-Chr9:30934741 | 3.80E-56 | dispersed | |
Cco09g1803 | Cco-Chr9:30934741 | Cco01g1797 | Cco-Chr1:30671175 | 3.30E-06 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59987 | PF06203 | CCT | 1.60E-15 | CL0281 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g1803 | - | - | - | 0.0 |