Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1803 ATGCCGGACTCCAATTTCCAAGACACGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACAGAGTTGGCGATGAAGATGACGACATTAACGGCGGGGAAGAGTCGATAGATAATCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATGAACCGAGTCCAGGACGTTGTTCCTGCGACGTATGTTTCCAGCTCTGATTACAACCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTGTCACCGGACAAGGTGCAAGCGGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCATCAACCAGCAGGGTACCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCATTGAGTAGATTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAGTGTGCGAAAAGAAGTTGCGCTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCCATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACACATTGTGGAATCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGGCCAAGGACTCTATGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATCTTGAGGGATCTTTCCAAGGTTTCAAACACTGGCATCCAAGAACCCTCTGCGAAAGAGACTGAACAGAGCGACGGCGAAGCTGCTAATGAATCTGATGCTGCAATTAATGTGGATATTCTCACTTCTAATGGTGATAAATAG 924 47.94 MPDSNFQDTMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVMNRVQDVVPATYVSSSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPINQQGTDGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIQEPSAKETEQSDGEAANESDAAINVDILTSNGDK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30934741 30940518 + CcPI632755_09g018030.1 Cco09g1803 188260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1803 307 MobiDBLite consensus disorder prediction 267 307 - -
Cco09g1803 307 MobiDBLite consensus disorder prediction 1 58 - -
Cco09g1803 307 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g1803 307 PANTHER GATA TRANSCRIPTION FACTOR 28 38 299 IPR045280 GO:0006355(InterPro)
Cco09g1803 307 MobiDBLite consensus disorder prediction 1 24 - -
Cco09g1803 307 Gene3D - 221 286 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco09g1803 307 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cco09g1803 307 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g1803 307 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Cco09g1803 307 CDD ZnF_GATA 224 274 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g1803 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Cco09g1803 307 SMART tify_2 86 121 IPR010399 -
Cco09g1803 307 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Cco09g1803 307 Pfam tify domain 90 120 IPR010399 -
Cco09g1803 307 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g1803 307 SMART GATA_3 219 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1803 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1314 Cco-Chr8:25001798 Cco09g1803 Cco-Chr9:30934741 8.10E-61 dispersed
Cco09g0161 Cco-Chr9:1435788 Cco09g1803 Cco-Chr9:30934741 3.80E-56 dispersed
Cco09g1803 Cco-Chr9:30934741 Cco01g1797 Cco-Chr1:30671175 3.30E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g0161 . 170 341 Tify Gene Family AT3G21175 61.0 3.2e-48 188.7
Cco08g1314 . 47 314 Tify Gene Family AT4G24470 51.0 6.5e-66 248.1
Cco09g1803 . 89 267 Tify Gene Family AT4G24470 60.2 9.4e-49 191.0
Cco09g0161 . 184 384 Tify Gene Family AT4G24470 52.5 1.4e-44 177.2
Cco09g0161 . 170 401 Tify Gene Family AT1G51600 63.4 2.5e-75 279.3
Cco09g1803 . 86 303 Tify Gene Family AT1G51600 54.9 1.7e-52 203.4
Cco08g1313 . 161 316 Tify Gene Family AT1G51600 57.7 2.8e-42 169.5
Cco08g1314 . 47 314 Tify Gene Family AT4G24470 51.0 6.5e-66 248.1
Cco09g1803 . 89 267 Tify Gene Family AT4G24470 60.2 9.4e-49 191.0
Cco09g0161 . 184 384 Tify Gene Family AT4G24470 52.5 1.4e-44 177.2
Cco09g0161 . 170 401 Tify Gene Family AT1G51600 63.4 2.5e-75 279.3
Cco09g1803 . 86 303 Tify Gene Family AT1G51600 54.9 1.7e-52 203.4
Cco08g1313 . 161 316 Tify Gene Family AT1G51600 57.7 2.8e-42 169.5
Cco09g0161 . 170 341 Tify Gene Family AT3G21175 61.0 3.2e-48 188.7
Cco06g0656 . 1 180 Tify Gene Family AT4G14713 53.6 1.2e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59987 PF06203 CCT 1.60E-15 CL0281 Cco TF