Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1819 ATGTTGCAGTCTTCGATCCGGCGAGTGAGGAAGTTGAATGTTCTGAGGCCTCAGATCTTTACTCTCGGAAATTCTCGTTTCTCCACTTTTGCTCAACCGTCTTCCAAGCCTCATCCTCCGAGGGTTCCAAATCTCATAGGAGGGACTTTTGTGGATTCTCAATCCTCAACATTCATAGATGTCATAAACCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGATGAATTTAAAGCTGCAGTGTCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACTCCAGTTACAACTCGTCAACGAATTATGTTCAAGCTTCAAGAACTTATTAGGCGAGATATAGACAAACTTGCTTTGAATATTACCACAGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATTCCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCGAATGTGTCACATGGAATTGATACCTACAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCGTTCAATTTTCCAGCCATGATCCCCCTATGGATGTTCCCAATTGCTGTTACATGTGGGAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTCAATGCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTCGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTGCAGTCCAATATGGGTGCAAAAAATCATGCAATTGTCTTACCCGATGCCAGCATAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCACTTAGTACAGTTGTCTTTGTTGGAGACTCCAAGTTGTGGGAGGATAAACTTGTAGAACGTGCCAAAACTTTGAAGGTAAACTCTGGAACAGAACCTGACGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGATAGGATTCACAGATTGGTTCAATCTGGCGTCGATACTGGAGCCAGGCTACTGCTAGATGGGAGAAATATAGTGGTTCCTGGATACGAGAGTGGAAATTTTATTGGCCCTACTATCTTAACAGATGTGACGCCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAGAGTTTAGAGGAGGCCATTAGCATCGTTAACGGAAATAGGTATGGGAATGGAGCTTCCATATTCACAACATCTGGGATAGCGGCGAGGAAGTTTCAAACGGATATTGAAGCCGGACAGGTTGGGATCAATGTTCCAATTCCGGTTCCCTTGCCCTTCTTCTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTTTATGGCAAGGCTGGGGTCAACTTCTTCACACAGATCAAAACAGTGACACAACAATGGAAAGACTCAGCTGGGGGAACTGCAGTCAACCTTGCAATGCCAACCTCTTTGAAGTCATAG 1614 44.36 MLQSSIRRVRKLNVLRPQIFTLGNSRFSTFAQPSSKPHPPRVPNLIGGTFVDSQSSTFIDVINPATQEVVSQVPLTTNDEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDASIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKTLKVNSGTEPDADLGPVISKQAKDRIHRLVQSGVDTGARLLLDGRNIVVPGYESGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQAESLEEAISIVNGNRYGNGASIFTTSGIAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSAGGTAVNLAMPTSLKS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31301829 31310356 - CcPI632755_09g018190.1 Cco09g1819 188276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1819 537 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 46 293 - -
Cco09g1819 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491(InterPro)
Cco09g1819 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491(InterPro)
Cco09g1819 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491(InterPro)
Cco09g1819 537 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 287 487 - -
Cco09g1819 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 6 534 IPR010061 GO:0004491(PANTHER)|GO:0004491(InterPro)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Cco09g1819 537 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 44 518 IPR010061 GO:0004491(InterPro)
Cco09g1819 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491(InterPro)
Cco09g1819 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620(InterPro)
Cco09g1819 537 SUPERFAMILY ALDH-like 35 519 IPR016161 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1587 Cco-Chr4:31233484 Cco09g1819 Cco-Chr9:31301829 7.80E-194 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1819 K00140 - csv:101204924 1011.13