Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1819 ATGTTGCAGTCTTCGATCCGGCGAGTGAGGAAGTTGAATGTTCTGAGGCCTCAGATCTTTACTCTCGGAAATTCTCGTTTCTCCACTTTTGCTCAACCGTCTTCCAAGCCTCATCCTCCGAGGGTTCCAAATCTCATAGGAGGGACTTTTGTGGATTCTCAATCCTCAACATTCATAGATGTCATAAACCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGATGAATTTAAAGCTGCAGTGTCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACTCCAGTTACAACTCGTCAACGAATTATGTTCAAGCTTCAAGAACTTATTAGGCGAGATATAGACAAACTTGCTTTGAATATTACCACAGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATTCCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCGAATGTGTCACATGGAATTGATACCTACAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCGTTCAATTTTCCAGCCATGATCCCCCTATGGATGTTCCCAATTGCTGTTACATGTGGGAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTCAATGCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTCGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTGCAGTCCAATATGGGTGCAAAAAATCATGCAATTGTCTTACCCGATGCCAGCATAGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGTATGGCACTTAGTACAGTTGTCTTTGTTGGAGACTCCAAGTTGTGGGAGGATAAACTTGTAGAACGTGCCAAAACTTTGAAGGTAAACTCTGGAACAGAACCTGACGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGATAGGATTCACAGATTGGTTCAATCTGGCGTCGATACTGGAGCCAGGCTACTGCTAGATGGGAGAAATATAGTGGTTCCTGGATACGAGAGTGGAAATTTTATTGGCCCTACTATCTTAACAGATGTGACGCCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAGAGTTTAGAGGAGGCCATTAGCATCGTTAACGGAAATAGGTATGGGAATGGAGCTTCCATATTCACAACATCTGGGATAGCGGCGAGGAAGTTTCAAACGGATATTGAAGCCGGACAGGTTGGGATCAATGTTCCAATTCCGGTTCCCTTGCCCTTCTTCTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTTTATGGCAAGGCTGGGGTCAACTTCTTCACACAGATCAAAACAGTGACACAACAATGGAAAGACTCAGCTGGGGGAACTGCAGTCAACCTTGCAATGCCAACCTCTTTGAAGTCATAG 1614 44.36 MLQSSIRRVRKLNVLRPQIFTLGNSRFSTFAQPSSKPHPPRVPNLIGGTFVDSQSSTFIDVINPATQEVVSQVPLTTNDEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDASIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKTLKVNSGTEPDADLGPVISKQAKDRIHRLVQSGVDTGARLLLDGRNIVVPGYESGNFIGPTILTDVTPDMECYKEEIFGPVLLCMQAESLEEAISIVNGNRYGNGASIFTTSGIAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSAGGTAVNLAMPTSLKS 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31301829 31310356 - CcPI632755_09g018190.1 Cco09g1819 188276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1819 537 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 46 293 - -
Cco09g1819 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491(InterPro)
Cco09g1819 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491(InterPro)
Cco09g1819 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491(InterPro)
Cco09g1819 537 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 287 487 - -
Cco09g1819 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 6 534 IPR010061 GO:0004491(PANTHER)|GO:0004491(InterPro)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Cco09g1819 537 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 44 518 IPR010061 GO:0004491(InterPro)
Cco09g1819 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491(InterPro)
Cco09g1819 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620(InterPro)
Cco09g1819 537 SUPERFAMILY ALDH-like 35 519 IPR016161 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1819 K00140 - - csv:101204924 1011.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1587 Cco-Chr4:31233484 Cco09g1819 Cco-Chr9:31301829 7.80E-194 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1169 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 1.6e-212 735.7
Cco02g1789 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.5 5.1e-158 554.7
Cco06g1894 . 67 551 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 1.7e-153 539.7
Cco06g1894 . 1 551 Aldehyde Dehydrogenase Gene Family AT3G48000 75.9 1.0e-249 859.4
Cco02g1789 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.1 8.2e-247 849.7
Cco06g1169 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.1 1.4e-161 566.6
Cco02g1789 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 77.2 1.6e-170 595.9
Cco06g1894 . 46 395 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 3.5e-165 578.2
Cco06g1169 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.0 2.9e-103 372.5
Cco11g1635 . 13 479 Aldehyde Dehydrogenase Gene Family AT4G34240 64.5 3.0e-180 628.6
Cco11g1636 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 6.9e-177 617.5
Cco11g1635 . 67 477 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 3.2e-177 618.2
Cco11g1636 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 1.2e-176 616.3
Cco02g2482 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.2 1.4e-116 416.8
Cco07g0963 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.5 1.1e-184 643.3
Cco02g2482 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 1.3e-158 556.6
Cco02g2007 . 37 654 Aldehyde Dehydrogenase Gene Family AT1G79440 60.9 5.7e-208 720.7
Cco09g1819 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 3.7e-240 827.8
Cco04g1587 . 262 696 Aldehyde Dehydrogenase Gene Family AT2G14170 68.5 4.6e-182 634.8
Cco06g1872 . 1 499 Aldehyde Dehydrogenase Gene Family AT1G74920 81.2 5.3e-248 853.6
Cco06g1872 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G48170 80.7 6.3e-249 856.7
Cco02g1833 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 9.4e-269 922.5
Cco01g1581 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.4 5.5e-262 900.2
Cco06g0462 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.1 7.2e-276 946.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40