Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1854 ATGGGCTTTTCAATTCTCCGAACTTCCCCTCCTCTCTCTTCCTCCCGAGCTTTTCTCTGCAACCCCACACCCTTCCCTGCTTTTCCAATTCTTCCTCTTCCTCTCCACTCTTCGCCCCATTCATTGCTCTTCAAAACCCACTTCGAATCATCTTCTTCCTCGCTGATTCCTACTTCTTTCCCAATTTCTGCAACTCCATTCTGTGGGGCTTTTGCTCTGAGACCCCGTGCCTTCCGTCGGGGCCTCGTTTTTGCCATGTCTTCGCCTAATTCAGTCCAGAAATCGGAGGAGGAGTGGCGAGCCATCCTCTCGCCGGAGCAGTTTCGAATTCTCCGGCAAAAAGGAACAGAGTATCCAGGAACTGGTACATATGACAAGTTCTATGGCGAGGGAGTTTATCACTGTGCGGGATGTGGGGCACCCCTTTATAGGTCAAACACGAAATTTAAGTCCGGTTGTGGTTGGCCAGCATTCTTCGACGGTATTCCTGGAGCCATTAAACGCATTCCTGACCCTGATGGGATGAGGACTGAAATCACATGTGCTGCTTGTGATGATTTTGCGTCGTACTATTTAAATTGTCTTCTTCCGGATGAGTATTGGATTGAGTGTCCGATTGCAGCCATTGCCATGGCCGTAGAAATGGACACTTCTGGGTTTGTCTTTAAACTAGCAAATGTTTCTCACTGTATTCAAATTGGGTGTATTGGATTTATGAGTTTAGGCAATATGTTGGAGCCTGTTAGTTGCTGCCAGAGCTCCCAGTCCCAGATTTATAGTGCAGTTAAACAGAAGAATCCCTTGAGGGCCTACTCTCATACTGTTCATCAACTTTGTGGACCTTCCTTCAACTTACAATATTCACACTCGAAGAAAGTAGCTTTTCCATCATGCACCTTAAATTGCTGGAGGAATGATTATTCTTTAGTCCCTGTACTTTTTCACAATGGTGCTACTACACTAACATTCAAAGTAGTTGAACAGAATGGGTACAATTGGTCAAATCATAGGCCTAAACAGAGGGAAAGATTGAGAATGCGTGCAGCTCTTGATGTTGCAGCTGCTGTTGACGTCATCAATGATTTAGGATTGGATACGTTGACATTCCTAGCTGTGACTGTCATAGTTGTCCCTCTATTTAGGAGAATTAAGGCTAGCCCTATACTTGGTTTCTTCTTTGCTGGGATTGTACTTAATCAATTTGGCGTGATTAGAAATATTATAGATGTTAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGTTTGGAGCTTTCATTTGCACGTCTAAAGGCTCTTGCAAGGTTTGCTTTTGGCATGGGTTTGACACAGGTCATATTATCTACTATCGCTTTCACAGCATTTGAACTTCCCCCAAATGGGGCTATTGGAACAAGAATTTTGGAGTTCCTTTTTCACGCCAAATCTGACTTGGTTAACATCAGAAGCGTTGATGAAGCTATTGTGATTGGTGCTGCCCTTTCTCTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTTGCGACAAGATTTGGCTCAGCAACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCTTGGTCATACTTCCAGTTCTTGAGAGCCAGAATTTGGGCTCAGGAAGTATCTGGCCAATGCTCGCACAAGAAAGTTTGAAGGCTTTAGGTGGACTGGGTCTGCTGTCCCTTGGGGGAAAGTTGATTCTTAGGCGAGTTTTTGAGGTTGTGGCGGAAGCAAGAAGCTCAGAGGCTTTTGTGGCCCTTTGCCTGCTGACTGTTGCTGGCACTTCACTAATCACTCAGAAATTGGGCTTTAGTGATACGCTGGGAGCATTTTTGGCTGGGGCAATACTAGCAGAAACTAATTTCCGGACGCAGATTGAAGCAGATATTCGGCCATTTAGGGGCTTGCTCCTTGGGTTATTCTTTGTTACCACAGGGACCTCCATTGATATACAGCTCCTGTTCCGAGAATGGCCAAATGTTCTTGCACTTTTGGCAGGTTTAATAGCAATCAAGACCCTTATAATAACAGCAATAGGTCCCCGTGTGGGCCTCACTACTCAAGAAAGTGTAAGAATAGGCTTTCTTCTATCTCAAGGTGGCGAGTTCGGATTTGTAGTGTTTTCTCTAGCTAACAGGCTTGGAGTGCTTCCACTCGAGTTAAACAAGCTGCTCATCATTATTGTTGTCTTGTCAATGGCTCTAACCCCCTTGCTTAATGAAGCTGGACGAAAGGCATCTGAATTCATCAGCGAAAAGTACAAGACTGAGGATAAAGCTGCAGATACAGTGAATTTTGACGCTACTGAACCTGTTGTCATTGTTGGATTTGGACAAATGGGTCAGGTTCTGGCAAATTTCTTGTCTACACCTTTGGCATCTGGGATAGATGGCAATACTCCTGGATGGCCATATGTAGCATTTGACATTGATCTTTCCGTAGTGAAGACGTCTAGAAAGCTTGGGTTTCCTGTTCTCTATGGAGATGGATCCCGACCAGCTGTTTTGCAATCTGCTGGAATCTCTTCCCCAAAAGCTGTCATGGTTATGTTCACAGAGAAGAAGGCAACAATTGATGCTGTTCAAAAGCTCCGACTTGCATTCCCAGCTATCCCAATTTATGCCCGAGCTAAGGATGTGGTACATCTATTAGATTTAAAGACCGCAGGTGCAACGGATGCTATTTTGGAAGATGCTGAGACTAGTTTACAACTTGGGTCAAAGCTTTTGAAAGGCCTCGGAGTCATGTCTGACCAAGTGTCTTTCCTCAGTCAAATGGTAAGGAACTCTATGGAAATACAAGCTCAAGATGCACTCGACAAATCCAATGAGCAAGAGTTAGAGATTATGAAACCACTGCAGATACGTGTCAAGGACTCGATCGAGTCCCCTGAGAACAAACTGTCGAGGCTGAATGGGAAAGACAGTACTCAAATCTTAAATGGAAAAAAGGTGGATCAAATGAAGCAAGATACTGTTTTCCAGAAGCCTGAAGATATAGATGGAAATGGAGTCCTATACTGTGAACTTGATACGGAGAACAACTTTTTAGAGCAAAATGTGGTAGAGCCTCCAACCCACATAACAGCCACTGATGGTTTAGAAAAGTGA 3150 44.22 MGFSILRTSPPLSSSRAFLCNPTPFPAFPILPLPLHSSPHSLLFKTHFESSSSSLIPTSFPISATPFCGAFALRPRAFRRGLVFAMSSPNSVQKSEEEWRAILSPEQFRILRQKGTEYPGTGTYDKFYGEGVYHCAGCGAPLYRSNTKFKSGCGWPAFFDGIPGAIKRIPDPDGMRTEITCAACDDFASYYLNCLLPDEYWIECPIAAIAMAVEMDTSGFVFKLANVSHCIQIGCIGFMSLGNMLEPVSCCQSSQSQIYSAVKQKNPLRAYSHTVHQLCGPSFNLQYSHSKKVAFPSCTLNCWRNDYSLVPVLFHNGATTLTFKVVEQNGYNWSNHRPKQRERLRMRAALDVAAAVDVINDLGLDTLTFLAVTVIVVPLFRRIKASPILGFFFAGIVLNQFGVIRNIIDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPPNGAIGTRILEFLFHAKSDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGSGSIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDIQLLFREWPNVLALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMGQVLANFLSTPLASGIDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKTAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDALDKSNEQELEIMKPLQIRVKDSIESPENKLSRLNGKDSTQILNGKKVDQMKQDTVFQKPEDIDGNGVLYCELDTENNFLEQNVVEPPTHITATDGLEK 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31700656 31716832 - CcPI632755_09g018540.1 Cco09g1854 188311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1854 1049 Gene3D - 361 761 IPR038770 -
Cco09g1854 1049 Pfam TrkA-N domain 785 908 IPR003148 GO:0006813(InterPro)
Cco09g1854 1049 SUPERFAMILY Mss4-like 92 187 IPR011057 -
Cco09g1854 1049 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 96 216 IPR002579 GO:0033743(InterPro)
Cco09g1854 1049 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 784 922 IPR036291 -
Cco09g1854 1049 FunFam K(+) efflux antiporter 3, chloroplastic 361 760 - -
Cco09g1854 1049 Pfam SelR domain 98 187 IPR002579 GO:0033743(InterPro)
Cco09g1854 1049 Pfam Sodium/hydrogen exchanger family 372 753 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cco09g1854 1049 Coils Coil 941 961 - -
Cco09g1854 1049 ProSiteProfiles RCK N-terminal domain profile. 784 916 IPR003148 GO:0006813(InterPro)
Cco09g1854 1049 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 262 985 - GO:0009507(PANTHER)|GO:0016020(PANTHER)
Cco09g1854 1049 FunFam Glutathione-regulated potassium-efflux system protein KefB 782 954 - -
Cco09g1854 1049 Gene3D - 784 954 - -
Cco09g1854 1049 Gene3D Peptide methionine sulfoxide reductase. 83 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0208 Cco-Chr5:1633729 Cco09g1854 Cco-Chr9:31700656 2.00E-89 dispersed
Cco05g0659 Cco-Chr5:5365065 Cco09g1854 Cco-Chr9:31700656 6.60E-47 dispersed
Cco09g1854 Cco-Chr9:31700656 Cco08g1878 Cco-Chr8:29805265 2.50E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1854 K03455 - csv:101209266 1403.27