Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1855 ATGGCTGCCGCCATTGGACCTCTAACCTCTACGAAAACATCAGGAGCTGCATTTTTGGTTTTCTTGTTTCTGTCAATGGCGGCGGCTGTCGGGGGTTTGATGACCGGCTCTACCCGTCCGAGTGTTGAATTTATTGCTCCTTCAACGTCGTATTCTGCTCCGCTGCGTGTGTTCTTCAAGCCCTTCAAGGGTAAGAGACTTATGCTGAAGAGGGTAGGTTCTTGGGGTCCTAGGTGCGAGGTCGATCCCAATTCCACCTCGGTTCGAAGCGATCTGATTGGTCCGAATGCACCTGGTCTTTCGGCTCTTGAATTGCTTAAGACTTCTTCAGTTAATAGATATACAAGAGAAAGGAGCAGTATTGTGGTGATTGGTCTTAATGTTCACACTGCACCAGTAGAGTTGCGTGAGAAACTTGCCATTCCAGAAGCTCAATGGCCTCAGGCCATTGGTGAACTCTGTGCTCTGAACCATATAGAAGAAGCTGCTGTTCTTAGTACTTGTAATCGGATCGAGATTTATGTTGTAGCATTGTCGCAGCATCGTGGGGTTAAAGAAGTGACAGAATGGATGTCCAAGAGAAGTGGAATTCCTATGTCAGAGCTTTGTAAGCATAGGGTTCTATTATACAATAACGATGCGACTCAGCACCTCTTTGAAGTTTCTGCGGGTATCGACTCTCTTGTGCTTGGAGAAGGTCAAATTCTTGCTCAGGTGAAACATGTTGTTAAAACAGGACAAGGTGTAGCTGGTTTTGACAGGAAAATTAGTGGGTTGTTCAAGCATGCAATCACTGTCGGAAAGCGGGTTAGAACCGAGACCAACATTTCCTCAGGGTCGGTTTCTGTCAGTTCGGCTGCTGTGGAGCTCGCACAGAAGAAACTTCCAGAATCTTCATATGCTACTGCAAAAGTGATGGTAGTTGGTGCAGGAAAAATGGGAAAACTTGTGATCAAACACTTGGTTGCAAAAGGATGTAGGAAGATGATGGTTGTGAACAGAACTCAGGACAGTGTCGATGCTCTAAGCAAGGAACTCAAAGATGTTGAGATAATCTACAAACCCCTCCCAGATATTTTAGCGTGTGCTGCTGAAGCGGATGTCATCTTCACCTGCACTGCTTCGAAAACACCCTTATTCATGAAAGAACATGTAGGTATGCTCCCCTCTGCACGAACTGTAACAGGAAGACGTTTATTTGTCGATATATCAGTTCCAAGGAATGTCGAGCCATGTATATCAGATCTTGAGACCGTGTCTGTCTTCAATGTGGACGATCTCAAGGAAGTTGTGGCTGCTAACAAGGAGGATAGACTACAGAAAGTTCAGGAGGCTCAGTCGATAATCGCAGAAGAAATAAACAAATTTCAAGCATGGAAGGATTCCCTTGAAACTGTTCCTACCATCAAGAAGTTTAGAGCTTATGTTGAGAGGATTAGGGCTGCTGAACTAGACAAATGTTTGTCTAAGATGGGTGAAGACATCCCAAAGAAAAAGAAAGTAGCCATTAATGATCTTAGCTTGGGTATAGCTAACAAGCTACTTCATGGTCCAATACAGCACTTGAGATGTGATGGCAATGTTAGCCGGACGTTGGATGAGATACTTCAGAATATGCATGCTATTAACAGAATGTTTGATCTTGAGACAGATTTGTCCGTCTTGGAAGATAAGATTAGAGCAAAAGCTGAACGTGGCAAGAAGTAG 1707 44.35 MAAAIGPLTSTKTSGAAFLVFLFLSMAAAVGGLMTGSTRPSVEFIAPSTSYSAPLRVFFKPFKGKRLMLKRVGSWGPRCEVDPNSTSVRSDLIGPNAPGLSALELLKTSSVNRYTRERSSIVVIGLNVHTAPVELREKLAIPEAQWPQAIGELCALNHIEEAAVLSTCNRIEIYVVALSQHRGVKEVTEWMSKRSGIPMSELCKHRVLLYNNDATQHLFEVSAGIDSLVLGEGQILAQVKHVVKTGQGVAGFDRKISGLFKHAITVGKRVRTETNISSGSVSVSSAAVELAQKKLPESSYATAKVMVVGAGKMGKLVIKHLVAKGCRKMMVVNRTQDSVDALSKELKDVEIIYKPLPDILACAAEADVIFTCTASKTPLFMKEHVGMLPSARTVTGRRLFVDISVPRNVEPCISDLETVSVFNVDDLKEVVAANKEDRLQKVQEAQSIIAEEINKFQAWKDSLETVPTIKKFRAYVERIRAAELDKCLSKMGEDIPKKKKVAINDLSLGIANKLLHGPIQHLRCDGNVSRTLDEILQNMHAINRMFDLETDLSVLEDKIRAKAERGKK 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31723660 31726059 + CcPI632755_09g018550.1 Cco09g1855 188312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1855 568 Hamap Glutamyl-tRNA reductase [hemA]. 120 546 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cco09g1855 568 Gene3D - 119 279 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cco09g1855 568 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 67 564 - -
Cco09g1855 568 FunFam Glutamyl-tRNA reductase 120 279 - -
Cco09g1855 568 FunFam Glutamyl-tRNA reductase 279 437 - -
Cco09g1855 568 Gene3D - 280 431 - -
Cco09g1855 568 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 442 527 IPR036453 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cco09g1855 568 CDD NAD_bind_Glutamyl_tRNA_reduct 121 442 - -
Cco09g1855 568 ProSitePatterns Glutamyl-tRNA reductase signature. 217 240 IPR018214 GO:0008883(InterPro)
Cco09g1855 568 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 279 438 IPR036291 -
Cco09g1855 568 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 444 548 IPR015896 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cco09g1855 568 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 124 274 IPR015895 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cco09g1855 568 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 120 276 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cco09g1855 568 Pfam Shikimate / quinate 5-dehydrogenase 289 430 IPR006151 -
Cco09g1855 568 NCBIfam glutamyl-tRNA reductase 121 526 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1855 K02492 - - csv:101208135 891.338
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1347 Cco-Chr8:25383203 Cco09g1855 Cco-Chr9:31723660 1.50E-203 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g877 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00657 Csa07g00638 . Cme01g00165 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01608 Cam09g1542 Cec09g1771 Cco09g1855 . . Cre01g0789 . . Chy01g00173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014173 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 23