Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1863 ATGCCATGGGGTTACTGCTCTCCGTTCAGTGCCGCCGCCGCCGCAGCCTCCCTTTTACCGGGTTGCGCTGATTTCTTACTCTCACGGAAAAGAACAAGAGAAGTCTTTTATACAATGGGTAGTAAAAAGAGAAGCTCTAACTCCACAGACGGAGTGGAGATCCAGAAAGATGCACCGATGGATGACGTTAGTGCTGCTGTTTCAAAATCCTTAAAGAGAAAAATGAAGAAGGATAAAGAGAAAGATGCTGAACTGGAAAATGGGGATGTTGATATTCCTTCTTCTACCTTACCGGATTCTGAGAAACCAATGGAGAGAAAAAAGAAAAGGAAAACATTTGACAAAGAAAGAAAGCGAGCTATTTTGGAAAGTGAAGTACCTAAAGAAAAACAAATAAGTGTTAATTCTAAAGCTGACGAGACTAAGCCATCTTCTGTCTCTGTTTCAAGCAGTGGTCTCCCTGAATTTCATATCAGTGTTTTTAAGGACTTGGCATCTGCTGACATTTTGGTGAGAGAATCAGCTGCAGAAGCTTTGGCAACTGAGCTGCTAAAGGTTCAAGAAGCATATGACAAGCTTGAAAGTAAGGATTTGGTTGAGGGTGGGTTAAAACTGGAAGCTGAGAAGGATGATGGCTTGGATAATTGTGCACCATCTGTGAGATATGCTGTACGTAGACTGATTCGTGGTGTGTCTTCCTCGAGAGAGTGTGCGAGACAGGGTTTTGCCTTAGGATTGACTGCATTGATAAGTACACAGTCCAACATCAAGGTGGAGTCATTGCTGAAACTCATTGTTAATATGTTAGAGGTTTCTTCATCAATGAAGGGCCAGGAAGCGAGGGACTGTCTTTTGGGTCGATTGTTTGCTTATGGGGCTCTTGTCCACTCAGGAAGACTAACTGAAGAATGCTCTTCTGATAAAAACATTTCACATGTGAAGGAAATCACTAGTGTTCTTATATCTCTTGCAGCTAAAAAACGTTATCTACAAGAGCCTGCTGTCTCAATTATTTTAGAATTGATAGAAAAGTTAACACCTGAGTCAGTGTTGAATCATGTGCTTGAAGCTCCTGGAATTCAAGAGTGGTTTGAAGCAGCTACTGAAGTTGGGAACCCAGATGCACTGCTGTTGGCTTTAAAATTACGAGAAAAATTTTTTGCTGATTGTTCAATATTTGCTAAACTTTTACCAAATCCATTCAATCCTAGTAGATTTTTTTCTGTTGATCATCTGTCATCTCTAGCCAACTGTCTCAAGGAGTCTACTTTTTGCCAGCCAAGAGTCCACAGCTTATGGCCTGTTCTGCTAAACATTCTGTTGCCTGATACTGTTTTGAAAACTCAAGATGCAATCTCTGTTTCAACCTCATTGAAAAAGCATAAAAAAAATCGTAAAAGTGGCTCTTCTGAAGAAGAAATTCTGATAAACTTCCAAAATTTTTTTGAAGTTATAATTGAAGGAGCACTTCTGCTATCATCTCATGACCGTAAGCACTTGGTGTTTGATGTTCTACTTCTTCTCCTGCCAAGACTGCCAACAACTTTTGTCCCTCCTATGCTGTCATATAAAGTTGTTCAGTGCCTGATGGACATACTTTCAACAAAGGATTCCTGGTTGTATAAAGTTGTGCAGCATTTTCTAAAAGAATTATCTGAATGGGCAATGCAGGACGATGGCAGAAAAGTTGCTGTCATTGTTGCTTTACAGAAGCACAGCAATGGCAAGTTTGATAATATTACACGAACAAGGGCAGTTCAAAACCTGATGTCCGAGTTTAAGACAGAATCAGGTTGCTTTCTGTTTATTCAGAACTTGATGAGCATGTTTGTGGATGAAAGTCAAACATCAGAGGAACCTTCAGATCAGAGTCAAACAACTGATGACAACTCAGAGGTTGGTTCAGTTGAGGACAAGGACTCCACCGGAACAATGGGGAACTCTGATTTTTTGAGAACTTGGATTATAGAATCTCTACCATGTATGTTGAAACACTTGAAGCTGGAACCTGAGGCAAAATTCCGGGTGCAGAAAGAAATTTTGAAATTTCTAGCTGTTCAGGGTTTGTTCACCGCATCCCTTGGCACAGAAGTGACCTCTTTTGAACTACAAGAGAAATTTAAGTGGCCAAAAGCTCCCACATCTAGTGCTCTTTGCATGCTGTGTATTGAACAACTGCAGTTGTTACTTGCGAATGCTCAAAAGGGAGAGGGGTCTCATGGTTTGGTTAATGGTCTTGAGCCAAATGACCTCGGCTCTTATTTTATGAGGTTTCTTGGTACTTTACGCAACATTCCTTCAGTTTCTCTATTCCGTTGCCTGAGTGATGAGGATGAAGATGCATTCAAGAAACTGCAAGAGATGGAAACCAGGTTATGGAGAGAGGAAAGGAATTACGGTTTAAGTGCTGATGCAAACAAATTACATGCGCTAAGGTACTTGCTCATTCAGTTGCTTTTGCAAGTGCTCCTTCGACCAGAGGAATTTACTGAAGCTGCAATGGAGTTAATTATATGTTGTAAGAAAGCTTTTTCGTCAGCTGATCTACTAGGCTCCTCTGGAGATGATGAGTTGGATGGCGATGGAACACCGCAGTTAATGGATGTTCTTGTTGACACAATGCTTTCATTGTTACCACAGTCATCAGCACCCATGAGGTCTGCCATCGAGCAGGTTTTCAAGTATTTTTGTAGTGATATCACTGATGATGGGCTGATGAGAATGTTGAGGGTTGTCAAGAAAAATCTGAAACCTTCCAGACGTCACAATGCGGAGGATGAAGATGATGACGGGGATGAAGATGAGGATGAAGACTTTCTTGATGTTGAAGAAGATGAGGAAATTAATCAAGATGAAACTGGCAACACAGGTGATAGTGATGAACATACTGATGAATCTGAAGCCATAGATAGAGTTGGAGAAGTAGGCCGAGAACTTTCTGACGGTTCTGATGATTCTGAATCTGATGGAGGAATGGATGATGATGCAATGTTTCGAATGGATTCTTATCTTGCCCAAATCTTCAAAGAGCGAAAAAATCAAGCTGGGAGTGATACCGCTCAGTCTCAGCTTATGTTGTTCAAGCTTCGTGTCCTGTCACTTCTGGAAATTTACTTGCATGAAAATCCAGGTAAGCCACATGTTTTGTTAGTGTTCTCAAATTTGGCTCAGGTATTAGTTAACCCACATACTGCAGAAGGCAGCGAACAGCTTGAACAGCGTATATGGGGAATTTTGCAAAAGAAGATTTTCAAAGCAAAAGACTATCCAAAGGGAGAAGCAGTTCAAATGTCCATGCTTGAAAATTTGCTGGAGAAGAACCTAAAGTTGGCATCAAAACCCAAGAGAAAGAAATCTGCTGCAAATGTATCAAAAAAGAAGCAGTTAGCATCAATGAATCATTTCAAGATGATCGTTTCCCTGGGTCAGAATTCAACATATTGGATTCTGAAGATTATTGATGCAAAAAAATTGTCCAAGCCTGAGCTACAGAAAGTATTTGATATTTTTGATAGAGTTGTGGTGGATTATTTTCATAGTAAGAAGTCTCAGTTAAAGGCCGAATTTCTGAAAGAGATAATTAGAAGAAGGTCATGGGTTGGGCATCATCTTTATAGCTCCGTTCTAGAAAGATGTGTAAGTACGAATTCAGAGTTTCGACGAGTTGAAGGGCTAGATCTAATAACTGAGATAATAAAATCATCAATGTCTTCTGAAAATGGACATCATGTGGCAAAGGAACTGATGGAGAAATTCCTTCATGAACTATGCAATTTGATAAAGGAGTTACTGATGAATATGCCAGAAAAGCAGGCACGGCGAGCTGATGTACGGAAGTTTTGTGGCAAGATTTTCCATTTCGTATCCTCTCTTAAGATTAATAAGTCTTTTCTTTCGAGCTTGGCTCCCGAAGCTCTAGCTTTATGTGAATCTCAACTTGGCGAGCAGTTCAGTAGATTGAAGAAGCAGCGGGAATGA 3978 40.45 MPWGYCSPFSAAAAAASLLPGCADFLLSRKRTREVFYTMGSKKRSSNSTDGVEIQKDAPMDDVSAAVSKSLKRKMKKDKEKDAELENGDVDIPSSTLPDSEKPMERKKKRKTFDKERKRAILESEVPKEKQISVNSKADETKPSSVSVSSSGLPEFHISVFKDLASADILVRESAAEALATELLKVQEAYDKLESKDLVEGGLKLEAEKDDGLDNCAPSVRYAVRRLIRGVSSSRECARQGFALGLTALISTQSNIKVESLLKLIVNMLEVSSSMKGQEARDCLLGRLFAYGALVHSGRLTEECSSDKNISHVKEITSVLISLAAKKRYLQEPAVSIILELIEKLTPESVLNHVLEAPGIQEWFEAATEVGNPDALLLALKLREKFFADCSIFAKLLPNPFNPSRFFSVDHLSSLANCLKESTFCQPRVHSLWPVLLNILLPDTVLKTQDAISVSTSLKKHKKNRKSGSSEEEILINFQNFFEVIIEGALLLSSHDRKHLVFDVLLLLLPRLPTTFVPPMLSYKVVQCLMDILSTKDSWLYKVVQHFLKELSEWAMQDDGRKVAVIVALQKHSNGKFDNITRTRAVQNLMSEFKTESGCFLFIQNLMSMFVDESQTSEEPSDQSQTTDDNSEVGSVEDKDSTGTMGNSDFLRTWIIESLPCMLKHLKLEPEAKFRVQKEILKFLAVQGLFTASLGTEVTSFELQEKFKWPKAPTSSALCMLCIEQLQLLLANAQKGEGSHGLVNGLEPNDLGSYFMRFLGTLRNIPSVSLFRCLSDEDEDAFKKLQEMETRLWREERNYGLSADANKLHALRYLLIQLLLQVLLRPEEFTEAAMELIICCKKAFSSADLLGSSGDDELDGDGTPQLMDVLVDTMLSLLPQSSAPMRSAIEQVFKYFCSDITDDGLMRMLRVVKKNLKPSRRHNAEDEDDDGDEDEDEDFLDVEEDEEINQDETGNTGDSDEHTDESEAIDRVGEVGRELSDGSDDSESDGGMDDDAMFRMDSYLAQIFKERKNQAGSDTAQSQLMLFKLRVLSLLEIYLHENPGKPHVLLVFSNLAQVLVNPHTAEGSEQLEQRIWGILQKKIFKAKDYPKGEAVQMSMLENLLEKNLKLASKPKRKKSAANVSKKKQLASMNHFKMIVSLGQNSTYWILKIIDAKKLSKPELQKVFDIFDRVVVDYFHSKKSQLKAEFLKEIIRRRSWVGHHLYSSVLERCVSTNSEFRRVEGLDLITEIIKSSMSSENGHHVAKELMEKFLHELCNLIKELLMNMPEKQARRADVRKFCGKIFHFVSSLKINKSFLSSLAPEALALCESQLGEQFSRLKKQRE 1325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 31842466 31851494 - CcPI632755_09g018630.1 Cco09g1863 188320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1863 1325 MobiDBLite consensus disorder prediction 919 995 - -
Cco09g1863 1325 MobiDBLite consensus disorder prediction 67 88 - -
Cco09g1863 1325 MobiDBLite consensus disorder prediction 40 149 - -
Cco09g1863 1325 MobiDBLite consensus disorder prediction 955 984 - -
Cco09g1863 1325 MobiDBLite consensus disorder prediction 927 954 - -
Cco09g1863 1325 Pfam DNA polymerase phi 222 1039 IPR007015 GO:0003677(InterPro)|GO:0005730(InterPro)|GO:0006355(InterPro)|GO:0008134(InterPro)
Cco09g1863 1325 MobiDBLite consensus disorder prediction 614 644 - -
Cco09g1863 1325 SUPERFAMILY ARM repeat 159 1304 IPR016024 -
Cco09g1863 1325 Coils Coil 176 196 - -
Cco09g1863 1325 MobiDBLite consensus disorder prediction 100 136 - -
Cco09g1863 1325 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 104 1322 IPR007015 GO:0003677(InterPro)|GO:0005730(InterPro)|GO:0005730(PANTHER)|GO:0006355(InterPro)|GO:0008134(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1863 K02331 - - csv:101209511 2123.98
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g866 . . . . . Bpe12g00719 . . Cmo19g00510 . . . . . . . Cpe15g00390 . . . . . . . . . . . . . . . . . . . Csa07g00644 . Cme01g00159 . Blo13g00201 Bda15g00482 . . . . Bma08g00031 . . . . . . Car19g00369 . . . . . . . . . Cla09g01618 Cam09g1534 Cec09g1780 Cco09g1863 . . Cre01g0781 . . Chy01g00167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007466 1 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35