Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1918 ATGGAAGCTTCTCTGTATACATTTTCAATGCTAACTCGCCTCTTTCTCCTTCTTCTTCCCTATCTTTCTCTCTTAGTTGACTCAGTTTCTTTCAAAATTGATCAATTCGAGCCAACTGAAACTCGATTACTCTACCAAGGAGATGCTGTTCCTACTAATGGAGCAGTTATGTTTAGTGATCCTGAATATTCCTGTCTTGTTGGTCAAGCTATTTACAAAGATGCTATCCCAATTTGGGACTCTGAAACAGGAAAACTCACTGATTTCACAACCCATTTCTCCTTCACCATTGATACTCAAAATGCTTCACACTATGGCAATGGAGTTGCTTTTTTCTTGGCTCCAGCTGGGTTTCATATCCCTCCAAATTCAGCTGGTGGGTATCTTGGCCTTTTCAATAAGACCTACGCTGATTCATCCATAAACCAAATCCTTCATGTTGAGTTTGATTCTTACTCTAATGACTGGGATCCTAAATTTGAACATGTGGGTATCAATATTAACTCTGTTTCTTCCTCCAATTTCACAAAGTGGAATGTCAGCTTACATAGTTTAGACACTGTTGATGTGTTTATCTCCTATGATTCAACCACCAAATACTTGAGTGTCTCATGGATTAATGAAAAGACAGCAACTTCTCTTGAAAATACAACTTTGAGTTACCAGATTGATCTCATGAAGATTCTTCCTCAATGGGCAACGGTAGGATTTTCAGCTGCAACAGGGGCATATTTAGAGAGACATTTGCTATTTTCTTGGGAGTTTAGCTCCAGTTTAGAAATGAAACAACCAGCTAGTACTGAAAAGAGTGGGAAAAAAGTTGATGTAATTGTGGGTGTGACTGTTTCAATAGGAGTTTCAATTCTCATAGCAATTATAGCCTTTGTAGTACTTTGGAGATTGAAACAAAAGAAAAGAAAATCAGAAGAAGAAAAGTCTGAGGAGGTAAACTTGACATCCATTAATGATGATTTGGAAAGAGGGGCTGGACCCAGAAGGTTTTCTAGCAAGCTTCTTGCCATGGCAACCAATAACTTCTCAAATGAAAGAAAGCTAGGGGAAGGAGGATTTGGAGCAGTGTACAGAGGGTACATACCAGACATAGATTTGACAGTGGCTGTGAAGAAAATCTCAAGGGGTTCAAGACAGGGGAGAAAAGAGTACATAACTGAAGTCAAGATCATTAGTCGGCTTCGCCATCGAAACTTGGTGCAACTCATTGGTTGGTGTCATGATAAGGGTGAGTTCTTGTTGGTTTATGAATTCATGCCAAATGGTAGTCTTGATTCTCATCTCTTTGGTAAGAGAACCCCTCTTGCTTGGGCTGTGAGATATAAGATTGCTTTAGGTTTAGCCTCTGCATTGCTGTATCTCCATGAAGAATGGGAACAATGTGTGGTTCATAGAGACATTAAATCAAATCCTAATCTTAGACCTTCCATAAAACAAGCAATCCAAGTTCTTAACTTTGAGACAACGATGCCAAATCTTCCAAATAAAATGCCTGTTCCTATATATCCTGCTCCTCCCACGTCAATGAGCTCAAATGAAGCTTCTATTACTGTAAGTCTTGACATGGGTCGTTGA 1587 39.26 MEASLYTFSMLTRLFLLLLPYLSLLVDSVSFKIDQFEPTETRLLYQGDAVPTNGAVMFSDPEYSCLVGQAIYKDAIPIWDSETGKLTDFTTHFSFTIDTQNASHYGNGVAFFLAPAGFHIPPNSAGGYLGLFNKTYADSSINQILHVEFDSYSNDWDPKFEHVGININSVSSSNFTKWNVSLHSLDTVDVFISYDSTTKYLSVSWINEKTATSLENTTLSYQIDLMKILPQWATVGFSAATGAYLERHLLFSWEFSSSLEMKQPASTEKSGKKVDVIVGVTVSIGVSILIAIIAFVVLWRLKQKKRKSEEEKSEEVNLTSINDDLERGAGPRRFSSKLLAMATNNFSNERKLGEGGFGAVYRGYIPDIDLTVAVKKISRGSRQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMPNGSLDSHLFGKRTPLAWAVRYKIALGLASALLYLHEEWEQCVVHRDIKSNPNLRPSIKQAIQVLNFETTMPNLPNKMPVPIYPAPPTSMSSNEASITVSLDMGR 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32785574 32787541 + CcPI632755_09g019180.1 Cco09g1918 188375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1918 528 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Cco09g1918 528 Pfam Protein kinase domain 347 474 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1918 528 SUPERFAMILY Protein kinase-like (PK-like) 327 473 IPR011009 -
Cco09g1918 528 FunFam L-type lectin-domain containing receptor kinase IX.1 331 422 - -
Cco09g1918 528 PANTHER - 46 474 IPR050528 GO:0005886(PANTHER)
Cco09g1918 528 ProSitePatterns Protein kinases ATP-binding region signature. 352 376 IPR017441 GO:0005524(InterPro)
Cco09g1918 528 Pfam Legume lectin domain 29 269 IPR001220 GO:0030246(InterPro)
Cco09g1918 528 ProSiteProfiles Protein kinase domain profile. 346 528 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1918 528 FunFam L-type lectin-domain containing receptor kinase IX.1 27 268 - -
Cco09g1918 528 Gene3D Transferase(Phosphotransferase) domain 1 423 478 - -
Cco09g1918 528 Gene3D - 26 273 - -
Cco09g1918 528 CDD lectin_legume_LecRK_Arcelin_ConA 29 259 IPR001220 GO:0030246(InterPro)
Cco09g1918 528 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 261 IPR013320 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1918 Cco-Chr9:32785574 Cco09g1924 Cco-Chr9:32832492 6.90E-214 dispersed
Cco09g1918 Cco-Chr9:32785574 Cco09g1922 Cco-Chr9:32824820 8.40E-95 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87111 PF00139 Lectin_legB 3.50E-66 CL0004 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1918 - - - 0.0