Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1924 ATGGCTACTTCCTCCTATGTCTTTCCAATGTCAAGTCATCTCCTTTTCCTTCTCCTTCTTCTTTCCTTTCTTCCTCCCTCCATTCACTCAATTTCTTTCCAAATAGATCGGTTCAAGACCAATGAAAGTGATGCACTTTACCAAGGAGATGCCCTTCCTTCAGTTGGATCAGTTGAATTCAACAATGTTAATTATCTTTGTAGAGTTGGTTGGATTATCTACAAAGAAATTGTGCCAATTTGGGACTCTAAAACAGGAAAAACCACTGATTTTACAACCCACTTCACCTTCTTAATAGATACCCAAAATGTTCAAAACTATGGCCATGGAATAGCTTTCTTTCTAGCTCCAATTGGGTTCCAAATCCCTCCAAACTCAGCTGGTGGCTTTCTTGGCCTTTTCAACACCACAAATAGTGATTCAACCATCAACCAAATTGTTCATGTTGAATTTGATTCTTTCTCCAATCAAGAATGGGATCCTCCATATGAACATGTGGGCATAAATGTTAACTCCATTGCTTCTTCTAATTACACTCGTTGGAATGCTAATTTACATAGTGGAGATATTGCTGATGTGTGGATCTCCTATAATTCAACTACAAAAAACTTGAGTGTTTGGTGGAAATACCAAAGTGGTTCAAATTCTTCTGAGAATACAACTCTAAGTTACCAAATTGATCTCATGAAGGTTCTTCCTCAATGGGCTACAATAGGATTTTCAGCTGCAACTGGAATGTATGTAGAGAGACATACATTATTTTCATGGGAATTCAACTCCACCTTGGATATAAACAAAGCAAGTGAAGATAATGGGAATAAAGTTAATGTAATTGTGGGTGTGACTGTTTCAATAGGAGTTTCAATTCTCATAGCAATTATAGCCTTTGTAGTACTTTGGAGATTGAAACAAAAGAAAAGAAAATCAGAAGAAGAAAAGTCTGAGGAGGTAAACTTGACATCCATTAATGATGATTTGGAAAGAGGGGCTGGACCCAGAAGGTTTTCTAGCAAGCTTCTTGCCATGGCAACCAATAACTTCTCAAATGAAAGAAAGCTAGGGGAAGGAGGATTTGGAGCAGTGTACAGAGGGTACATACCAGACATAGATTTGACAGTGGCTGTGAAGAAAATCTCAAGGGGTTCAAGACAGGGGAGAAAAGAGTACATAACTGAAGTCAAGATCATTAGTCGACTTCGCCATCGAAACTTGGTGCAACTCATTGGTTGGTGTCATGATAAGGGTGAGTTCTTGTTGGTTTATGAATTCATGCCAAATGGTAGTCTTGATTCTCATCTCTTTGGTAAGAGAACCCCTCTTGCTTGGGCTGTGAGATATAAGATTGTTTTAGGTTTAGCCTCTGCATTGCTGTATCTCCATGAAGAATGGGAACAATGTGTGGTTCATAGAGACATTAAATCAAGTAATGTGATGTTGGATTCAAACTTCAATGTCAAGCTTGGGGATTTTGGGTTAGCTAGATTAATGGACCATGAGTTGGGAGCTCAAACAACTGGGTTGGTTGGAACTTTGGGCTACTTAGCTCCTGAATATATAAGCACAGGCAGAGCTAGTAAAGAATCTGATGTGTTTAGTTTTGGGGTTGTTGCTTTGGAGATTGCTACTGGAAGAGAATCTGATGTGTTTAGTTTTGGGGTTGTTGCTTTGGAGATTGCTACTGGAAGAATGTCAAGAACCTCCATGGATACAGAATCTCATAAGGGTTTGGTGGAGTGGGTTTGGGATCTTTATGGGAGTGGACAATTGATTGATGGCATGGATGAGAAATTGATGAAGTCTGATTATGACCAAAAACAAATAGAGTGTTTGATGCTTGTTGGACTTTGGAGTGCTTATCCTGACCCTAATTTAAGACCTTCAATAAGACAAGTAATTCAAGTTCTTAATTTTGAGACAACAATGCCAAATCTTCCAAGTAAAATGCCTGTTGCTGTGTATCATGCTCCTTCCACATCAATGAGCTCAAATGAACCAACAATTACTGCAAGTCTTGATGTGGGTCGTTGA 2028 38.91 MATSSYVFPMSSHLLFLLLLLSFLPPSIHSISFQIDRFKTNESDALYQGDALPSVGSVEFNNVNYLCRVGWIIYKEIVPIWDSKTGKTTDFTTHFTFLIDTQNVQNYGHGIAFFLAPIGFQIPPNSAGGFLGLFNTTNSDSTINQIVHVEFDSFSNQEWDPPYEHVGINVNSIASSNYTRWNANLHSGDIADVWISYNSTTKNLSVWWKYQSGSNSSENTTLSYQIDLMKVLPQWATIGFSAATGMYVERHTLFSWEFNSTLDINKASEDNGNKVNVIVGVTVSIGVSILIAIIAFVVLWRLKQKKRKSEEEKSEEVNLTSINDDLERGAGPRRFSSKLLAMATNNFSNERKLGEGGFGAVYRGYIPDIDLTVAVKKISRGSRQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMPNGSLDSHLFGKRTPLAWAVRYKIVLGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLMDHELGAQTTGLVGTLGYLAPEYISTGRASKESDVFSFGVVALEIATGRESDVFSFGVVALEIATGRMSRTSMDTESHKGLVEWVWDLYGSGQLIDGMDEKLMKSDYDQKQIECLMLVGLWSAYPDPNLRPSIRQVIQVLNFETTMPNLPSKMPVAVYHAPSTSMSSNEPTITASLDVGR 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32832492 32834519 - CcPI632755_09g019240.1 Cco09g1924 188381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1924 675 Pfam Protein kinase domain 348 544 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1924 675 Pfam Legume lectin domain 31 270 IPR001220 GO:0030246(InterPro)
Cco09g1924 675 ProSitePatterns Protein kinases ATP-binding region signature. 353 377 IPR017441 GO:0005524(InterPro)
Cco09g1924 675 Gene3D Phosphorylase Kinase; domain 1 332 423 - -
Cco09g1924 675 Gene3D Transferase(Phosphotransferase) domain 1 424 544 - -
Cco09g1924 675 FunFam Lectin-domain containing receptor kinase A4.3 424 546 - -
Cco09g1924 675 CDD STKc_IRAK 353 636 - -
Cco09g1924 675 Gene3D Transferase(Phosphotransferase) domain 1 545 657 - -
Cco09g1924 675 PANTHER - 57 545 IPR050528 GO:0005886(PANTHER)
Cco09g1924 675 ProSiteProfiles Protein kinase domain profile. 347 644 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1924 675 FunFam L-type lectin-domain containing receptor kinase IX.1 332 423 - -
Cco09g1924 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 263 IPR013320 -
Cco09g1924 675 SUPERFAMILY Protein kinase-like (PK-like) 544 656 IPR011009 -
Cco09g1924 675 Gene3D - 28 287 - -
Cco09g1924 675 FunFam L-type lectin-domain containing receptor kinase IX.1 29 271 - -
Cco09g1924 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g1924 675 SUPERFAMILY Protein kinase-like (PK-like) 328 544 IPR011009 -
Cco09g1924 675 SMART serkin_6 347 640 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g1924 675 CDD lectin_legume_LecRK_Arcelin_ConA 31 262 IPR001220 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1844 Cco-Chr9:31420148 Cco09g1924 Cco-Chr9:32832492 7.00E-153 dispersed
Cco09g1878 Cco-Chr9:32002232 Cco09g1924 Cco-Chr9:32832492 6.10E-125 dispersed
Cco09g1918 Cco-Chr9:32785574 Cco09g1924 Cco-Chr9:32832492 6.90E-214 dispersed
Cco09g1924 Cco-Chr9:32832492 Cco10g0777 Cco-Chr10:13171002 6.00E-178 dispersed
Cco09g1922 Cco-Chr9:32824820 Cco09g1924 Cco-Chr9:32832492 2.90E-102 proximal
Cco09g1923 Cco-Chr9:32826052 Cco09g1924 Cco-Chr9:32832492 2.70E-60 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87113 PF00139 Lectin_legB 3.20E-69 CL0004 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1924 - - - 0.0