Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1954 ATGGATTCTGAGGCCGGCGATGGAGATGGGGTTGTCTTCGAGTTCCTCCCTGCCTTCCGCGTCTTCAAAAGCGGCCGTGTCCAGAGGCTCTTCCCCGACGACCGCCTTCCGCCCTCCACCGATCCACTTACCGGCGTCCAATCCAAAGATATCCTCATCGATCCACAAACCCAACTCTCCGTCCGGATCTTCCTCCCACATGTTTCCCACTCCACCAAGAAGCTCCCGCTTCTAATTTACATCCACGGTGGCGCATTCTCCATCGGCTCCGTCGCGACGCCGATGTACCACCACCACCTGATCTCCCTGGCCGCTGAGGCCAATGCCGTGGCTCTCTCAGTAGAGTACCGTCTGGCGCCGGAGCATCCACTCCCAGCGGCATACGACGACGCGTGGGCGGCGGTGGAATGGGCGGCGTCGCATTCCAATGGGAAGGGCGAGGAGATTTGGCTGAACCAACACGCAGATTTCAACCACGTATCGGTGGTGGGGGATAGCGCTGGGGCCAACATTTCGTACAATGTGGTGGTCCGGGCTAGCGAGAGTAATAATGGGGCGAAGGGAATGAAGATAAGTGGGTTGGGTCTGGTTCATCCGTTCTTCATGATTGACAAGCCTGATAAGTTGATAGACTATATTTTCCCCACGTCATCGGGGTTGGATGATCCGAGGCTGAACCCATGGGCCAACCCGAAACTAGGGAAGCTGCGGTGTGGGCGAGTCTTGATATTGGCGGCTGATCTTGATTTGCTAAAGGATAGGGCACATGGGTTTTACGCAGCCTTAAGGGAGAATGGGTTTGAAGGGTCGGTGGAGATGGTTGAAACCCAAGGGGAGGACCACGTGTTTCATTTGTTTAACCCCAACACCGACAAGGCTGTTGCATTGCTCAAAAAACTCGCTTCCTTCATCCAATCAATAGATGGCGTTGGAACTCGAACCTCCTATCTTTAA 954 55.03 MDSEAGDGDGVVFEFLPAFRVFKSGRVQRLFPDDRLPPSTDPLTGVQSKDILIDPQTQLSVRIFLPHVSHSTKKLPLLIYIHGGAFSIGSVATPMYHHHLISLAAEANAVALSVEYRLAPEHPLPAAYDDAWAAVEWAASHSNGKGEEIWLNQHADFNHVSVVGDSAGANISYNVVVRASESNNGAKGMKISGLGLVHPFFMIDKPDKLIDYIFPTSSGLDDPRLNPWANPKLGKLRCGRVLILAADLDLLKDRAHGFYAALRENGFEGSVEMVETQGEDHVFHLFNPNTDKAVALLKKLASFIQSIDGVGTRTSYL 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33512148 33513431 - CcPI632755_09g019540.1 Cco09g1954 188411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1954 317 SUPERFAMILY alpha/beta-Hydrolases 20 306 IPR029058 -
Cco09g1954 317 Gene3D alpha/beta hydrolase 20 307 IPR029058 -
Cco09g1954 317 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 78 93 IPR002168 GO:0016787(InterPro)
Cco09g1954 317 PANTHER ARYLACETAMIDE DEACETYLASE 17 303 IPR050466 -
Cco09g1954 317 Pfam alpha/beta hydrolase fold 78 284 IPR013094 GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1954 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1225 Cco-Chr8:23969125 Cco09g1954 Cco-Chr9:33512148 9.60E-36 dispersed
Cco09g1946 Cco-Chr9:33394965 Cco09g1954 Cco-Chr9:33512148 3.20E-65 dispersed
Cco09g1949 Cco-Chr9:33454740 Cco09g1954 Cco-Chr9:33512148 9.60E-78 dispersed
Cco09g1950 Cco-Chr9:33468402 Cco09g1954 Cco-Chr9:33512148 2.10E-69 dispersed
Cco09g1952 Cco-Chr9:33487937 Cco09g1954 Cco-Chr9:33512148 5.10E-124 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g444 Blo02g00821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00303 . . . . . . . . . . . . . . . . . . . Cpe05g01218 Bhi10g02086 . . . Hepe08g1070 . . Cla09g01704 Cam09g1801 Cec09g1862 Cco09g1954 . . Cre01g0706 . Csa02g01193 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001193 1 6 2 2 1 3 2 3 3 1 2 3 2 1 2 2 3 5 2 3 1 4 5 2 3 7 2 2 2 1 78