Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1956 ATGGCCCAGCCTTCCAACGGTGCTGATCTCAATCCCCAGGCCCCTCACCCTCACCACCAATGGTTTCAACAACAACAACAGTATCAGCAGCAATGGATGGCGATGCAGTACCCTGCCGCCGCCATGGCCATGATGCATCAACAGCAGATGATGATGTATCCTCCTCAGCATTACATGGCGTATTCTCACCATCCTTATCAACAGCAGCAACAGCAACAACAGCAGCCGTCGCAGCAGCAGCAGCAGCAGCAAGCTCAGTCGCAGCGACCTCGCAGACAGGGGTCAACGGACGAGGTTAAAACGCTTTGGATTGGTGACCTTCAGCCTTGGATGGACGAGACCTACCTCAATAATTGTTTCGCTCACACCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCGCATGCAACGGCCGATAAAGTTTTGCAGAATTATAATGGTGCTATAATGCCTAACACAGAGCTGCCTTTCCGTCTCAATTGGGCAACTTTTAGTGCAAATGATAGGCGACCAGACACTGGTTCTGACCTATCGATATTTGTTGGTGATTTGGCTGCCGATGTGACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAGATACACATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTATGGCTTTGTCAGGTTTGGTGATGAAAATGAAAGGACAAGGGCTATGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAGGCATCTGGATATCAACAAGGTTATTCTTCACAAGCTTTGGTACTGGCTGGTGGACATGCAAATGGCATGGCCGTTCAGGGTTCACAATCAGATGGCGAGTCAAACAACACGACTATATTTGTTGGCGGCCTTGATTCTGATGTTAGTGATGAAGATCTCAAGCAACCTTTCTCTAAATTTGGTGATGTTGTATCTGTGAAAATTCCTATTGGAAAAGGATGTGGATTTGTGCAATTTGCTAACAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGAAAATAACCAATGGAATGGGGGACGTTATGGCGGGCAAGGCTACGGTGGATATGGTGGTGGCTACTACTCCGTACCACAGCATCAGGACACAAACATACATGCCACAGCTGCTGCAGTTAATGGATCATCTTGA 1308 46.25 MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMAYSHHPYQQQQQQQQQPSQQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGENNQWNGGRYGGQGYGGYGGGYYSVPQHQDTNIHATAAAVNGSS 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33559879 33569970 + CcPI632755_09g019560.1 Cco09g1956 188413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1956 435 SUPERFAMILY RNA-binding domain, RBD 64 184 IPR035979 GO:0003676(InterPro)
Cco09g1956 435 FunFam Polyadenylate-binding protein RBP47 293 413 - -
Cco09g1956 435 MobiDBLite consensus disorder prediction 64 98 - -
Cco09g1956 435 SMART rrm1_1 312 379 IPR000504 GO:0003723(InterPro)
Cco09g1956 435 SMART rrm1_1 101 174 IPR000504 GO:0003723(InterPro)
Cco09g1956 435 SMART rrm1_1 194 268 IPR000504 GO:0003723(InterPro)
Cco09g1956 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 383 IPR000504 GO:0003723(InterPro)
Cco09g1956 435 FunFam Polyadenylate-binding protein RBP47B 181 283 - -
Cco09g1956 435 FunFam Polyadenylate-binding protein RBP47B 99 179 - -
Cco09g1956 435 CDD RRM1_SECp43_like 101 181 - -
Cco09g1956 435 Gene3D - 58 191 IPR012677 -
Cco09g1956 435 SUPERFAMILY RNA-binding domain, RBD 303 412 IPR035979 GO:0003676(InterPro)
Cco09g1956 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 54 384 IPR050825 GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005829(PANTHER)
Cco09g1956 435 SUPERFAMILY RNA-binding domain, RBD 176 286 IPR035979 GO:0003676(InterPro)
Cco09g1956 435 MobiDBLite consensus disorder prediction 64 92 - -
Cco09g1956 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 272 IPR000504 GO:0003723(InterPro)
Cco09g1956 435 CDD RRM2_SECp43_like 192 271 - -
Cco09g1956 435 MobiDBLite consensus disorder prediction 1 25 - -
Cco09g1956 435 Gene3D - 293 419 IPR012677 -
Cco09g1956 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 180 IPR000504 GO:0003723(InterPro)
Cco09g1956 435 Pfam RNA recognition motif 102 171 IPR000504 GO:0003723(InterPro)
Cco09g1956 435 Pfam RNA recognition motif 313 376 IPR000504 GO:0003723(InterPro)
Cco09g1956 435 Pfam RNA recognition motif 195 265 IPR000504 GO:0003723(InterPro)
Cco09g1956 435 Gene3D - 192 269 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1956 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2230 Cco-Chr5:31049340 Cco09g1956 Cco-Chr9:33559879 1.00E-124 dispersed
Cco05g2233 Cco-Chr5:31080832 Cco09g1956 Cco-Chr9:33559879 4.70E-125 dispersed
Cco07g1555 Cco-Chr7:29591277 Cco09g1956 Cco-Chr9:33559879 1.60E-07 dispersed
Cco08g1746 Cco-Chr8:28692039 Cco09g1956 Cco-Chr9:33559879 6.70E-19 dispersed
Cco09g1956 Cco-Chr9:33559879 Cco11g0156 Cco-Chr11:1650887 6.60E-29 dispersed
Cco09g1956 Cco-Chr9:33559879 Cco05g2228 Cco-Chr5:31020028 1.20E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117