Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1962 ATGCCTCCCAACACTCCTATTATCCTCTCCTTTCGCTTCCTAATTCTTCCTTTCTTCTTCCTTTCATCCTTTTCTGATCCTAATTATAATTACAACAATCAAAATAATGGTTACGCCGAGCTTAGACCTGACTTTTACGACGAGTCATGCCCCCGTTTACCAATGATAATTCGGTATCATATTTGGGCTGCTGTCCAAAATGACTCTAGAATGGCTGCATCGTTGTTGCGCTTGAATTTCCACGACTGCATTGTAGATGGATGTGATGCATCAGTGTTGCTTGACGATACAAAAGATATGAAAGGCGAGAAGAAAGCTCCGGGCAACGTGAACTCGCTGCGAGGGTTTGAAGTGATTGATGGCATAAAAGCAGATGTAGAAACATATTGCCCACAGACAGTTTCATGTGCTGATATTGTGAATCTTGCAGCTAGAGAAGCTGTGTATCTGGTTGGAGGACCGTTTTGGCACCTTCCACTAGGACGTAGAGATGGGTTAACAGCAAGCACAAAATCAGTGCTGGCACAGCTCCCATCTCCCAAGGCATCTCTAGAGAACAACACCGCCAAGTTCATCTCAAAAGGCCTGGACTTAAAGGATCTCGTCGTGCTTTCAGGAGCACACACCATCGGCTTTGCCCGTTGTGTCACATTCAAAGGCCGCCTCTTCAACTACAAAGGCTCCGGGAACCCAGATCCCGACATAAACGCCGCAATGCTTTCCGACCTACGGTCCATGTGCCCCAACAGGAACGACGGCACCAACGCCAATTTGGTGCCGCTGGATGTGGCCAGTTACGACAGATTCGACAACGAGTACTATACGAATCTGATTAGCAATGTTGGGCTTTTGGAGTCGGACCAGGGTCTGATGGCAGACCCCCAGACGGCGCGGATGGTTAGAGATTACAGCTTTGATCTGAATCTGTTCTTCAATGACTTTGCGGAGTCGATGATGAGGATGAGCATGGCTGGGGTTCTGACCGGTCAAGATGGACAGATTCGAAAGGAATGTGGCGCTGTTAATAATGATGATGGCTACTGA 1044 47.7 MPPNTPIILSFRFLILPFFFLSSFSDPNYNYNNQNNGYAELRPDFYDESCPRLPMIIRYHIWAAVQNDSRMAASLLRLNFHDCIVDGCDASVLLDDTKDMKGEKKAPGNVNSLRGFEVIDGIKADVETYCPQTVSCADIVNLAAREAVYLVGGPFWHLPLGRRDGLTASTKSVLAQLPSPKASLENNTAKFISKGLDLKDLVVLSGAHTIGFARCVTFKGRLFNYKGSGNPDPDINAAMLSDLRSMCPNRNDGTNANLVPLDVASYDRFDNEYYTNLISNVGLLESDQGLMADPQTARMVRDYSFDLNLFFNDFAESMMRMSMAGVLTGQDGQIRKECGAVNNDDGY 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33655216 33657314 - CcPI632755_09g019620.1 Cco09g1962 188419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1962 347 PRINTS Haem peroxidase superfamily signature 134 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PRINTS Haem peroxidase superfamily signature 152 164 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PRINTS Haem peroxidase superfamily signature 200 215 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PRINTS Haem peroxidase superfamily signature 72 86 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PRINTS Haem peroxidase superfamily signature 262 277 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 ProSitePatterns Peroxidases active site signature. 72 83 IPR019794 GO:0004601(InterPro)
Cco09g1962 347 PRINTS Plant peroxidase signature 133 143 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PRINTS Plant peroxidase signature 114 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PRINTS Plant peroxidase signature 199 211 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PRINTS Plant peroxidase signature 50 69 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PRINTS Plant peroxidase signature 316 329 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PRINTS Plant peroxidase signature 152 167 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PRINTS Plant peroxidase signature 276 293 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PRINTS Plant peroxidase signature 74 94 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PRINTS Plant peroxidase signature 260 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 CDD secretory_peroxidase 40 341 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco09g1962 347 ProSitePatterns Peroxidases proximal heme-ligand signature. 200 210 IPR019793 -
Cco09g1962 347 FunFam Peroxidase 44 191 - -
Cco09g1962 347 Gene3D - 44 342 - -
Cco09g1962 347 SUPERFAMILY Heme-dependent peroxidases 41 342 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 ProSiteProfiles Plant heme peroxidase family profile. 40 342 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 FunFam Peroxidase 178 321 - -
Cco09g1962 347 Gene3D Peroxidase, domain 2 178 321 - -
Cco09g1962 347 Pfam Peroxidase 58 304 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g1962 347 PANTHER PEROXIDASE 72-RELATED 22 340 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1962 Cco-Chr9:33655216 Cco11g0594 Cco-Chr11:6349590 3.00E-72 dispersed
Cco04g1423 Cco-Chr4:29638604 Cco09g1962 Cco-Chr9:33655216 1.30E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1962 K00430 - csv:101209504 596.275