Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1973 ATGAATTATTTGACTATACTCTTCTTCCTCTTCCTTACTTCTACACTAACCAAAACGCGGTCAGATCCGCCGTCTAGCCCCGGTGGCAGCGGCGGCGGCGGCAAGCACTTCGTTCTAGTTCACGGAGCTTGCCTTGGCGCCTGGTCGTGGTACAAACTATACACGCTGCTCCAATCGGCCGGGCACCGCGTGACAGCGCTAGACATGGCGGCGGCCGGAGTAGATCCGAGGGAGGCGGAGAATCTGAAATCGTTCAGCGAATACGTTCAGCCGTTGATGAACTTCATGGCGGAGCTGAGGGCGGAGGAGAAGGTGATTCTGGTAGGGCACAGCCAAGGCGGGCTGTGCATCTCGAAGGCGATGGAGGGCTTTCCGGAGAAAATATTTGTAGCTGTTTTTGTCGTCGCCGCCATGCCTGGCCCATCGCTAAACGTTTCCTTTCTACTTGGACAGTTTCGCAAGAGAATAGATTTTGGGCCAGACAGCCGTTATACGTTTGGTAATGTGCCTAAAAGCCCTCCAACAACTTTGACATTTGGCCCATTGTTCTTGGCATCAAAACTATTCAACAAGAGCCCCAAAGAGGATTTGACATTGGGGAAGACATTGATGAGACCAACCCATTTGTTTGAGGCACAACAATGGAACAAGGATCTAGTTTTGACTAAGGAAAGGTATGGCGCCGTCAAACGAGTTTTTGTTGTTTCGGATAAGGATAAGGTTATCCAAATGAGCTTCCAAAAATGGGTGATTCAAAAAAATCCACCTACTGCTGTTGTGGAAGTTAGGGGATCAGATCATATGGTGATGATGTCTAAGCCGTTGGATCTCTTCAATAAACTTTCCCACATTGCTCATCACTATTCTTAG 870 48.97 MNYLTILFFLFLTSTLTKTRSDPPSSPGGSGGGGKHFVLVHGACLGAWSWYKLYTLLQSAGHRVTALDMAAAGVDPREAENLKSFSEYVQPLMNFMAELRAEEKVILVGHSQGGLCISKAMEGFPEKIFVAVFVVAAMPGPSLNVSFLLGQFRKRIDFGPDSRYTFGNVPKSPPTTLTFGPLFLASKLFNKSPKEDLTLGKTLMRPTHLFEAQQWNKDLVLTKERYGAVKRVFVVSDKDKVIQMSFQKWVIQKNPPTAVVEVRGSDHMVMMSKPLDLFNKLSHIAHHYS 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33894496 33897601 - CcPI632755_09g019730.1 Cco09g1973 188430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1973 289 FunFam (S)-hydroxynitrile lyase 33 289 - -
Cco09g1973 289 SUPERFAMILY alpha/beta-Hydrolases 31 279 IPR029058 -
Cco09g1973 289 PANTHER METHYLESTERASE FAMILY MEMBER 35 288 IPR045889 GO:0009694(PANTHER)|GO:0009696(PANTHER)|GO:0080030(PANTHER)|GO:0080031(PANTHER)|GO:0080032(PANTHER)
Cco09g1973 289 Gene3D alpha/beta hydrolase 34 289 IPR029058 -
Cco09g1973 289 Pfam Alpha/beta hydrolase family 37 279 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1973 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0617 Cco-Chr2:6049634 Cco09g1973 Cco-Chr9:33894496 7.70E-62 dispersed
Cco03g0802 Cco-Chr3:8630822 Cco09g1973 Cco-Chr9:33894496 3.90E-29 dispersed
Cco03g0803 Cco-Chr3:8639395 Cco09g1973 Cco-Chr9:33894496 8.50E-16 dispersed
Cco03g0804 Cco-Chr3:8646491 Cco09g1973 Cco-Chr9:33894496 1.60E-67 dispersed
Cco04g1413 Cco-Chr4:29530213 Cco09g1973 Cco-Chr9:33894496 4.80E-59 dispersed
Cco04g1414 Cco-Chr4:29536760 Cco09g1973 Cco-Chr9:33894496 1.60E-57 dispersed
Cco04g1415 Cco-Chr4:29542950 Cco09g1973 Cco-Chr9:33894496 6.80E-56 dispersed
Cco02g0612 Cco-Chr2:6010598 Cco09g1973 Cco-Chr9:33894496 4.60E-66 wgd
Cco04g1412 Cco-Chr4:29526042 Cco09g1973 Cco-Chr9:33894496 1.90E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g475 . . . . . . . . . . . . . . Sed08g2645 . . Bhi05g01157 Tan02g0874 Cmetu01g0432 . . . . . . . . . . . . Cone8ag1158 . . . Csa07g00789 . . . . . . . . . . . . . Cma11g01774 . . . . . . . . . . . . Cla09g01724 Cam09g1820 Cec09g1880 Cco09g1973 . . . . Csa02g01207 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112