Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g1977 | ATGGGCCAGCCCCTTCCATCGGCTGGTTCAACTTTTAGGTCAAAAGAAGAATCAGTGGAAGAAGGGCAAGTAGATCTGAAAGCTCATACAACAGAGCCCCATACGGCGGAGATTGAGGGAGAGAAATCCGGCGACGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTCACCTCAACTATCCAAGCTAGGAAATTGAGAATCCCAGAATCTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGTTTGAGAAAAGCCGATAACAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCCATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTAAATGCTTCTGAAATAAACTACCAATCAGCTGCTCTCAGTAGTAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCCTCCAATCAGTCCATGAATTCTGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCTGAGTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAATTAAAAAGAGTGGAGGGAAAAAGCGGAAAATTGAGTCTAGCGAGCATCATCCATCTGCTCATAATAGTGAAGATTTAGGAGATATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTTGAGCCCGGTAATCCTTTCTGCAGAGTTGTCTTGCGACCATCCTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGACGGGAGACAGTGGCCAGTCCGGTGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTCTGCCTGGAAAATAATCTAGGGGAGGGTGACGTTTGTGTGTTTGAGCTTCTTAGAATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAACCCCCAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAACTGATCAGAAATTAA | 1359 | 42.6 | MGQPLPSAGSTFRSKEESVEEGQVDLKAHTTEPHTAEIEGEKSGDAFRTGGFKRKMPRPHFHKLVLTSTIQARKLRIPESFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNASEINYQSAALSSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRIKKSGGKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMATPNPASMMNPPPLRSVSHIKLIRN | 452 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 33935960 | 33939251 | + | CcPI632755_09g019770.1 | Cco09g1977 | 188434 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g1977 | 452 | ProSiteProfiles | B3 DNA-binding domain profile. | 326 | 421 | IPR003340 | GO:0003677(InterPro) | |
Cco09g1977 | 452 | Pfam | B3 DNA binding domain | 61 | 151 | IPR003340 | GO:0003677(InterPro) | |
Cco09g1977 | 452 | Pfam | B3 DNA binding domain | 328 | 419 | IPR003340 | GO:0003677(InterPro) | |
Cco09g1977 | 452 | SUPERFAMILY | DNA-binding pseudobarrel domain | 57 | 153 | IPR015300 | - | |
Cco09g1977 | 452 | CDD | B3_DNA | 324 | 419 | IPR003340 | GO:0003677(InterPro) | |
Cco09g1977 | 452 | Gene3D | - | 303 | 423 | IPR015300 | - | |
Cco09g1977 | 452 | MobiDBLite | consensus disorder prediction | 259 | 284 | - | - | |
Cco09g1977 | 452 | Gene3D | - | 52 | 154 | IPR015300 | - | |
Cco09g1977 | 452 | SMART | B3_2 | 61 | 153 | IPR003340 | GO:0003677(InterPro) | |
Cco09g1977 | 452 | SMART | B3_2 | 326 | 421 | IPR003340 | GO:0003677(InterPro) | |
Cco09g1977 | 452 | CDD | B3_DNA | 59 | 151 | IPR003340 | GO:0003677(InterPro) | |
Cco09g1977 | 452 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Cco09g1977 | 452 | PANTHER | B3 DOMAIN-CONTAINING | 57 | 406 | IPR050655 | - | |
Cco09g1977 | 452 | ProSiteProfiles | B3 DNA-binding domain profile. | 60 | 153 | IPR003340 | GO:0003677(InterPro) | |
Cco09g1977 | 452 | SUPERFAMILY | DNA-binding pseudobarrel domain | 321 | 420 | IPR015300 | - | |
Cco09g1977 | 452 | MobiDBLite | consensus disorder prediction | 14 | 49 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1408 | Cco-Chr2:26296978 | Cco09g1977 | Cco-Chr9:33935960 | 3.10E-29 | dispersed | |
Cco02g1409 | Cco-Chr2:26300244 | Cco09g1977 | Cco-Chr9:33935960 | 6.70E-28 | dispersed | |
Cco02g1412 | Cco-Chr2:26343515 | Cco09g1977 | Cco-Chr9:33935960 | 1.30E-26 | dispersed | |
Cco09g1977 | Cco-Chr9:33935960 | Cco09g1978 | Cco-Chr9:33954592 | 4.80E-46 | tandem | |
Cco07g1797 | Cco-Chr7:32100669 | Cco09g1977 | Cco-Chr9:33935960 | 2.50E-29 | transposed | |
Cco04g1406 | Cco-Chr4:29466770 | Cco09g1977 | Cco-Chr9:33935960 | 1.60E-22 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59992 | PF02362 | B3 | 6.70E-18 | CL0405 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g1977 | - | - | - | 0.0 |