Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1977 ATGGGCCAGCCCCTTCCATCGGCTGGTTCAACTTTTAGGTCAAAAGAAGAATCAGTGGAAGAAGGGCAAGTAGATCTGAAAGCTCATACAACAGAGCCCCATACGGCGGAGATTGAGGGAGAGAAATCCGGCGACGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTCACCTCAACTATCCAAGCTAGGAAATTGAGAATCCCAGAATCTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGTTTGAGAAAAGCCGATAACAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCCATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTAAATGCTTCTGAAATAAACTACCAATCAGCTGCTCTCAGTAGTAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCCTCCAATCAGTCCATGAATTCTGGTTCTTTGCGAAATAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCTGAGTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAATTAAAAAGAGTGGAGGGAAAAAGCGGAAAATTGAGTCTAGCGAGCATCATCCATCTGCTCATAATAGTGAAGATTTAGGAGATATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTTGAGCCCGGTAATCCTTTCTGCAGAGTTGTCTTGCGACCATCCTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGACGGGAGACAGTGGCCAGTCCGGTGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTCTGCCTGGAAAATAATCTAGGGGAGGGTGACGTTTGTGTGTTTGAGCTTCTTAGAATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAACCCCCAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAACTGATCAGAAATTAA 1359 42.6 MGQPLPSAGSTFRSKEESVEEGQVDLKAHTTEPHTAEIEGEKSGDAFRTGGFKRKMPRPHFHKLVLTSTIQARKLRIPESFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNASEINYQSAALSSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRIKKSGGKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMATPNPASMMNPPPLRSVSHIKLIRN 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33935960 33939251 + CcPI632755_09g019770.1 Cco09g1977 188434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1977 452 ProSiteProfiles B3 DNA-binding domain profile. 326 421 IPR003340 GO:0003677(InterPro)
Cco09g1977 452 Pfam B3 DNA binding domain 61 151 IPR003340 GO:0003677(InterPro)
Cco09g1977 452 Pfam B3 DNA binding domain 328 419 IPR003340 GO:0003677(InterPro)
Cco09g1977 452 SUPERFAMILY DNA-binding pseudobarrel domain 57 153 IPR015300 -
Cco09g1977 452 CDD B3_DNA 324 419 IPR003340 GO:0003677(InterPro)
Cco09g1977 452 Gene3D - 303 423 IPR015300 -
Cco09g1977 452 MobiDBLite consensus disorder prediction 259 284 - -
Cco09g1977 452 Gene3D - 52 154 IPR015300 -
Cco09g1977 452 SMART B3_2 61 153 IPR003340 GO:0003677(InterPro)
Cco09g1977 452 SMART B3_2 326 421 IPR003340 GO:0003677(InterPro)
Cco09g1977 452 CDD B3_DNA 59 151 IPR003340 GO:0003677(InterPro)
Cco09g1977 452 MobiDBLite consensus disorder prediction 1 49 - -
Cco09g1977 452 PANTHER B3 DOMAIN-CONTAINING 57 406 IPR050655 -
Cco09g1977 452 ProSiteProfiles B3 DNA-binding domain profile. 60 153 IPR003340 GO:0003677(InterPro)
Cco09g1977 452 SUPERFAMILY DNA-binding pseudobarrel domain 321 420 IPR015300 -
Cco09g1977 452 MobiDBLite consensus disorder prediction 14 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1408 Cco-Chr2:26296978 Cco09g1977 Cco-Chr9:33935960 3.10E-29 dispersed
Cco02g1409 Cco-Chr2:26300244 Cco09g1977 Cco-Chr9:33935960 6.70E-28 dispersed
Cco02g1412 Cco-Chr2:26343515 Cco09g1977 Cco-Chr9:33935960 1.30E-26 dispersed
Cco09g1977 Cco-Chr9:33935960 Cco09g1978 Cco-Chr9:33954592 4.80E-46 tandem
Cco07g1797 Cco-Chr7:32100669 Cco09g1977 Cco-Chr9:33935960 2.50E-29 transposed
Cco04g1406 Cco-Chr4:29466770 Cco09g1977 Cco-Chr9:33935960 1.60E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59992 PF02362 B3 6.70E-18 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1977 - - - 0.0