Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g1986 ATGCCGACCGCCCCTTCTCCTTCTCCTTCTCCTTCTCCTTCCCCTTCCTCCTCCTCCACCGCCGTCAATTTCCCTCCCCCCGCCTCCTTGCAGTCGGCAAAGCTCCCCGTCGATTTCAGTCCCCCTCTAATCGCCATGGTTGTCGTCATCGCTACCGCCTTCCTCATCGTCACTTACTCTCGCCTCATCTCCCGCCATCTCATCCCTCCCATTCTCCACCTCCTCCGTCTCCACCGTCGTCGCTGGCGCCGGTGGCGGCGCCGACGTCGACGCGCCCGATCTTACCTTCCGTCTTCCTCTGGAGGCGACCTGGATTCACTCCCTTACGATTCGCCTTTCTTCGAACCTACAGATGGCTTCCACGTTTTCTCTCCGTACGGTCTCGACGAATCCGTAATCAAGACGATTCCGCTTTCCGTTTACACTGCCAAAAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTCGAGTTTGAAGACGATGATTACGTCAGAACGCTTCCGATTTGTTCTCACGCGTTTCACGTTGATTGTATAGATGTATGGCTTAGGTCACACGCGAACTGTCCTCTTTGTCGCGCGGTGGTTTTCAGGCCGGAATCTCCATTTACGCCGGTTATGGCTGCTAGAATCCGGCCAAGCCTCGATGATACGATCTTACGGAGTATCGTATTAGAGCCGCTCGTGGAAGGTCCTATTCCTAATCTAGATTCTTATCACGCGACGGAATCGGAAATTACTCCTTGCGTTGATGAACCACGGAATAGCAATTCCGTGGAGGATCAAATGAACGGACAAGATTTCTTGCTGAAGCGATCGTATTCATTTGGATTCGAACGGAGCTTAGCGTCGGAGAGAATGATTTTGGAACCAGCGACCACGTCTCCTTGGAGGTACCGTCGTGGAAGCTTCTGGAGCAAACGTCCGTCGCCGTTCGGATCTCTGCCGAAGGCAAGAGTGTTTTCGTTCCGATACTACAGAGGAATGAAGTCGCCGTTCTTCAGACGAAGAGGAGGATTCTTTCCGCTATCGGAATCAAGCTGGAGATTCTCCAACGGTGTAGGCGGAGGCTCATCGAGACGGAGTAAGTCAATGACGAGTCCGATGTTTCTCCGATCGTCGGTAACCGGCGGAGGAACAGCGGCGTTCTCGTCGAGCCGGTTGAGATGCGGAGATCCCGAGGCGTTATTATCACCGGAGAGATTCAACCAAAGATGA 1215 53.91 MPTAPSPSPSPSPSPSSSSTAVNFPPPASLQSAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRLHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEPTDGFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLVEGPIPNLDSYHATESEITPCVDEPRNSNSVEDQMNGQDFLLKRSYSFGFERSLASERMILEPATTSPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTGGGTAAFSSSRLRCGDPEALLSPERFNQR 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34082242 34083456 - CcPI632755_09g019860.1 Cco09g1986 188443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g1986 404 MobiDBLite consensus disorder prediction 351 376 - -
Cco09g1986 404 SUPERFAMILY RING/U-box 146 198 - -
Cco09g1986 404 CDD RING-H2_EL5-like 149 192 - -
Cco09g1986 404 Pfam Ring finger domain 149 192 IPR001841 -
Cco09g1986 404 PANTHER RING-H2 FINGER PROTEIN ATL16 18 215 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cco09g1986 404 MobiDBLite consensus disorder prediction 1 23 - -
Cco09g1986 404 FunFam RING-H2 finger protein ATL65 121 196 - -
Cco09g1986 404 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Cco09g1986 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 196 IPR013083 -
Cco09g1986 404 SMART ring_2 150 191 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1986 Cco-Chr9:34082242 Cco09g2090 Cco-Chr9:35300044 1.40E-17 dispersed
Cco09g1986 Cco-Chr9:34082242 Cco05g0503 Cco-Chr5:4049529 1.80E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g1986 - - - 0.0