Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2019 ATGGAGTTCCTAATCCTCCATTTGGGTCTTCTTTTTATGGTCTCATCTGTTAATGCCAATTATGGAGGTTGGATCAACGCTCATGCCACTTTCTATGGTGGAAGCGATGCATCTGGGACAATGGGAGGGGCTTGTGGGTATGGTAATTTGTATAGCCAAGGCTATGGGACTAACACTGCGGCGCTGAGCACAGCGTTGTTTGATAATGGACTCAGCTGTGGCGCTTGCTTTGAGCTACGGTGTGTGAACGACCCCCAATGGTGTCTTCCAGGCACCATCGTTGTCACTGCCACTAATTTCTGCCCTCCTGGCGGCTGGTGCGACCCTCCCAACCATCATTTTGACCTCTCTCAGCCTATCTTCCAACACATTGCCCAATATCGCGCCGGAATTGTCCCCGTCGCTTATCGCAGAGTAAGGTGCAGGAGAAGTGGGGGAATAAGATTCACAATCAATGGGCATTCATATTTCAATTTGGTGTTGGTGACAAACGTGGGGGGCGCCGGAGATGTACATGCCGTGGCGATTAAGGGTTCGAAAACCAGATGGCAACCGATGTCTAGAAATTGGGGGCAAAATTGGCAATCCAACTCTTATCTGAACGGACAGAGTCTATCGTTTTTGGTTACCGCCAGCGACGGACGGCGAGTGCTCTCCTACAACGTGGCTCCCTCCGGCTGGTCCTTTGGACAGACTTATGTCGGCGGACAATTTCGTTACTAA 723 50.76 MEFLILHLGLLFMVSSVNANYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRSGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRRVLSYNVAPSGWSFGQTYVGGQFRY 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34423639 34424517 + CcPI632755_09g020190.1 Cco09g2019 188476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2019 240 CDD DPBB_EXPA_N 23 141 - -
Cco09g2019 240 FunFam Expansin 13 142 - -
Cco09g2019 240 Gene3D - 146 238 IPR036749 -
Cco09g2019 240 FunFam Expansin 146 238 - -
Cco09g2019 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 235 IPR007117 -
Cco09g2019 240 PRINTS Expansin signature 54 68 IPR002963 GO:0009664(InterPro)
Cco09g2019 240 PRINTS Expansin signature 93 103 IPR002963 GO:0009664(InterPro)
Cco09g2019 240 PRINTS Expansin signature 121 134 IPR002963 GO:0009664(InterPro)
Cco09g2019 240 PRINTS Expansin signature 221 237 IPR002963 GO:0009664(InterPro)
Cco09g2019 240 PRINTS Expansin signature 81 92 IPR002963 GO:0009664(InterPro)
Cco09g2019 240 PRINTS Expansin signature 157 178 IPR002963 GO:0009664(InterPro)
Cco09g2019 240 PRINTS Expansin signature 192 213 IPR002963 GO:0009664(InterPro)
Cco09g2019 240 PRINTS Expansin signature 104 121 IPR002963 GO:0009664(InterPro)
Cco09g2019 240 PRINTS Expansin signature 145 157 IPR002963 GO:0009664(InterPro)
Cco09g2019 240 Pfam Expansin C-terminal domain 147 224 IPR007117 -
Cco09g2019 240 Gene3D - 12 142 IPR036908 -
Cco09g2019 240 Pfam Lytic transglycolase 59 136 IPR009009 -
Cco09g2019 240 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576(InterPro)
Cco09g2019 240 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576(InterPro)
Cco09g2019 240 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576(InterPro)
Cco09g2019 240 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576(InterPro)
Cco09g2019 240 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576(InterPro)
Cco09g2019 240 PRINTS Expansin/Lol pI family signature 183 197 IPR007118 GO:0005576(InterPro)
Cco09g2019 240 SUPERFAMILY Barwin-like endoglucanases 23 164 IPR036908 -
Cco09g2019 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Cco09g2019 240 SUPERFAMILY PHL pollen allergen 143 234 IPR036749 -
Cco09g2019 240 SMART dpbb_1 59 136 IPR007112 -
Cco09g2019 240 PANTHER EXPANSIN-A15 10 238 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2019 Cco-Chr9:34423639 Cco11g0985 Cco-Chr11:16321521 2.40E-105 dispersed
Cco01g1803 Cco-Chr1:30718981 Cco09g2019 Cco-Chr9:34423639 1.00E-95 wgd
Cco05g2686 Cco-Chr5:34845054 Cco09g2019 Cco-Chr9:34423639 1.70E-110 wgd
Cco06g1813 Cco-Chr6:28495715 Cco09g2019 Cco-Chr9:34423639 1.30E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2019 K20628 - csv:101220358 472.626