Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g2028 | ATGGATTTAGCCCCAGCTCCCATCACAACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCGGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAACGGTGTTCTCAAGCGCCACCATAACCGTCAACCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGACCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCGCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA | 903 | 51.27 | MDLAPAPITTSSNNTKSPDADSDTPTKIPRSSSLKSLPFTNGVLKRHHNRQPSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 34533493 | 34534395 | + | CcPI632755_09g020280.1 | Cco09g2028 | 188485 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g2028 | 300 | MobiDBLite | consensus disorder prediction | 136 | 150 | - | - | |
Cco09g2028 | 300 | Pfam | ZF-HD protein dimerisation region | 56 | 110 | IPR006456 | - | |
Cco09g2028 | 300 | SUPERFAMILY | Homeodomain-like | 186 | 259 | IPR009057 | - | |
Cco09g2028 | 300 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Cco09g2028 | 300 | MobiDBLite | consensus disorder prediction | 275 | 300 | - | - | |
Cco09g2028 | 300 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 58 | 109 | IPR006456 | - | |
Cco09g2028 | 300 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 58 | 109 | IPR006456 | - | |
Cco09g2028 | 300 | MobiDBLite | consensus disorder prediction | 130 | 159 | - | - | |
Cco09g2028 | 300 | Gene3D | - | 185 | 259 | - | - | |
Cco09g2028 | 300 | NCBIfam | homeobox domain, ZF-HD class | 198 | 255 | IPR006455 | - | |
Cco09g2028 | 300 | FunFam | Zinc-finger homeodomain protein 2 | 185 | 259 | - | - | |
Cco09g2028 | 300 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Cco09g2028 | 300 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 40 | 256 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g2028 | Cco-Chr9:34533493 | Cco10g0813 | Cco-Chr10:16698730 | 3.00E-36 | dispersed | |
Cco09g2028 | Cco-Chr9:34533493 | Cco09g2029 | Cco-Chr9:34545941 | 7.80E-13 | tandem | |
Cco01g1816 | Cco-Chr1:30804701 | Cco09g2028 | Cco-Chr9:34533493 | 1.40E-12 | wgd | |
Cco10g1496 | Cco-Chr10:28049765 | Cco09g2028 | Cco-Chr9:34533493 | 2.50E-80 | wgd | |
Cco05g2700 | Cco-Chr5:34914552 | Cco09g2028 | Cco-Chr9:34533493 | 9.70E-42 | wgd | |
Cco06g1826 | Cco-Chr6:28553005 | Cco09g2028 | Cco-Chr9:34533493 | 1.40E-13 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59997 | PF04770 | ZF-HD_dimer | 9.80E-29 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g2028 | - | - | - | 0.0 |