Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2028 ATGGATTTAGCCCCAGCTCCCATCACAACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCGGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAACGGTGTTCTCAAGCGCCACCATAACCGTCAACCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGACCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCGCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 903 51.27 MDLAPAPITTSSNNTKSPDADSDTPTKIPRSSSLKSLPFTNGVLKRHHNRQPSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34533493 34534395 + CcPI632755_09g020280.1 Cco09g2028 188485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2028 300 MobiDBLite consensus disorder prediction 136 150 - -
Cco09g2028 300 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Cco09g2028 300 SUPERFAMILY Homeodomain-like 186 259 IPR009057 -
Cco09g2028 300 MobiDBLite consensus disorder prediction 1 39 - -
Cco09g2028 300 MobiDBLite consensus disorder prediction 275 300 - -
Cco09g2028 300 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Cco09g2028 300 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Cco09g2028 300 MobiDBLite consensus disorder prediction 130 159 - -
Cco09g2028 300 Gene3D - 185 259 - -
Cco09g2028 300 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cco09g2028 300 FunFam Zinc-finger homeodomain protein 2 185 259 - -
Cco09g2028 300 MobiDBLite consensus disorder prediction 1 45 - -
Cco09g2028 300 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2028 Cco-Chr9:34533493 Cco10g0813 Cco-Chr10:16698730 3.00E-36 dispersed
Cco09g2028 Cco-Chr9:34533493 Cco09g2029 Cco-Chr9:34545941 7.80E-13 tandem
Cco01g1816 Cco-Chr1:30804701 Cco09g2028 Cco-Chr9:34533493 1.40E-12 wgd
Cco10g1496 Cco-Chr10:28049765 Cco09g2028 Cco-Chr9:34533493 2.50E-80 wgd
Cco05g2700 Cco-Chr5:34914552 Cco09g2028 Cco-Chr9:34533493 9.70E-42 wgd
Cco06g1826 Cco-Chr6:28553005 Cco09g2028 Cco-Chr9:34533493 1.40E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59997 PF04770 ZF-HD_dimer 9.80E-29 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2028 - - - 0.0