Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2028 ATGGATTTAGCCCCAGCTCCCATCACAACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCGGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAACGGTGTTCTCAAGCGCCACCATAACCGTCAACCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGACCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCGCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 903 51.27 MDLAPAPITTSSNNTKSPDADSDTPTKIPRSSSLKSLPFTNGVLKRHHNRQPSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34533493 34534395 + CcPI632755_09g020280.1 Cco09g2028 188485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2028 300 MobiDBLite consensus disorder prediction 136 150 - -
Cco09g2028 300 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Cco09g2028 300 SUPERFAMILY Homeodomain-like 186 259 IPR009057 -
Cco09g2028 300 MobiDBLite consensus disorder prediction 1 39 - -
Cco09g2028 300 MobiDBLite consensus disorder prediction 275 300 - -
Cco09g2028 300 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Cco09g2028 300 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Cco09g2028 300 MobiDBLite consensus disorder prediction 130 159 - -
Cco09g2028 300 Gene3D - 185 259 - -
Cco09g2028 300 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cco09g2028 300 FunFam Zinc-finger homeodomain protein 2 185 259 - -
Cco09g2028 300 MobiDBLite consensus disorder prediction 1 45 - -
Cco09g2028 300 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2028 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2028 Cco-Chr9:34533493 Cco10g0813 Cco-Chr10:16698730 3.00E-36 dispersed
Cco09g2028 Cco-Chr9:34533493 Cco09g2029 Cco-Chr9:34545941 7.80E-13 tandem
Cco01g1816 Cco-Chr1:30804701 Cco09g2028 Cco-Chr9:34533493 1.40E-12 wgd
Cco10g1496 Cco-Chr10:28049765 Cco09g2028 Cco-Chr9:34533493 2.50E-80 wgd
Cco05g2700 Cco-Chr5:34914552 Cco09g2028 Cco-Chr9:34533493 9.70E-42 wgd
Cco06g1826 Cco-Chr6:28553005 Cco09g2028 Cco-Chr9:34533493 1.40E-13 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1302 . 52 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.6e-46 181.4
Cco08g1302 . 22 241 ZF-HD Transcription Factor Family AT4G24660 51.1 2.1e-50 196.1
Cco10g0813 . 46 187 ZF-HD Transcription Factor Family AT4G24660 52.1 2.4e-41 166.0
Cco11g0011 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.2e-51 200.7
Cco11g0011 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 3.9e-55 212.2
Cco04g1718 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cco10g1496 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.0e-51 199.1
Cco09g2028 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.8 8.0e-49 191.0
Cco10g1496 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cco09g2028 . 16 256 ZF-HD Transcription Factor Family AT3G28920 58.8 3.2e-57 219.2
Cco09g2028 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.0 3.1e-50 196.1
Cco10g1496 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cco09g2028 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cco11g0011 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.2e-51 200.7
Cco08g1302 . 22 241 ZF-HD Transcription Factor Family AT4G24660 51.1 2.1e-50 196.1
Cco10g0813 . 46 187 ZF-HD Transcription Factor Family AT4G24660 52.1 2.4e-41 166.0
Cco09g2028 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.0 3.1e-50 196.1
Cco10g1496 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cco04g1718 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cco08g1302 . 52 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.6e-46 181.4
Cco09g2028 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cco10g1496 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.0e-51 199.1
Cco09g2028 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.8 8.0e-49 191.0
Cco11g0011 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 3.9e-55 212.2
Cco10g1496 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cco09g2028 . 16 256 ZF-HD Transcription Factor Family AT3G28920 58.8 3.2e-57 219.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59997 PF04770 ZF-HD_dimer 9.80E-29 No_clan Cco TF