Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g2029 | ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGAGACTGTGGCTTCCTCTTTCACAGTAAGGAGTGTAAGATATGGGGAGTGCCAAAAGAACCATGCCGCTGGGGTCGGAGGGTACGCAGTTGACGGGTGTCGAGAATTCATGGCGAGTGGCGACGAAGGGACGACCGCTGCACTGACTTGCGCTGCCTGCGGTTGCCACCGGAATTTCCATAGAAGGCAAGTTGGAACTGAGGTGGTTTGCGATTGCTCTTCATCACCCTCAAATGGAACTTGA | 291 | 52.92 | MRKRQVVLRRSEEPSRETVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT | 96 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 34545941 | 34546231 | + | CcPI632755_09g020290.1 | Cco09g2029 | 188486 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g2029 | 96 | Pfam | ZF-HD protein dimerisation region | 28 | 80 | IPR006456 | - | |
Cco09g2029 | 96 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 30 | 79 | IPR006456 | - | |
Cco09g2029 | 96 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 17 | 79 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Cco09g2029 | 96 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 29 | 79 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1816 | Cco-Chr1:30804701 | Cco09g2029 | Cco-Chr9:34545941 | 2.80E-26 | dispersed | |
Cco06g1826 | Cco-Chr6:28553005 | Cco09g2029 | Cco-Chr9:34545941 | 1.90E-26 | dispersed | |
Cco09g2029 | Cco-Chr9:34545941 | Cco11g0011 | Cco-Chr11:140881 | 4.90E-17 | dispersed | |
Cco09g2028 | Cco-Chr9:34533493 | Cco09g2029 | Cco-Chr9:34545941 | 7.80E-13 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59998 | PF04770 | ZF-HD_dimer | 3.30E-30 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g2029 | - | - | - | 0.0 |