Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2029 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGAGACTGTGGCTTCCTCTTTCACAGTAAGGAGTGTAAGATATGGGGAGTGCCAAAAGAACCATGCCGCTGGGGTCGGAGGGTACGCAGTTGACGGGTGTCGAGAATTCATGGCGAGTGGCGACGAAGGGACGACCGCTGCACTGACTTGCGCTGCCTGCGGTTGCCACCGGAATTTCCATAGAAGGCAAGTTGGAACTGAGGTGGTTTGCGATTGCTCTTCATCACCCTCAAATGGAACTTGA 291 52.92 MRKRQVVLRRSEEPSRETVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34545941 34546231 + CcPI632755_09g020290.1 Cco09g2029 188486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2029 96 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Cco09g2029 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Cco09g2029 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 79 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cco09g2029 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1816 Cco-Chr1:30804701 Cco09g2029 Cco-Chr9:34545941 2.80E-26 dispersed
Cco06g1826 Cco-Chr6:28553005 Cco09g2029 Cco-Chr9:34545941 1.90E-26 dispersed
Cco09g2029 Cco-Chr9:34545941 Cco11g0011 Cco-Chr11:140881 4.90E-17 dispersed
Cco09g2028 Cco-Chr9:34533493 Cco09g2029 Cco-Chr9:34545941 7.80E-13 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59998 PF04770 ZF-HD_dimer 3.30E-30 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2029 - - - 0.0