Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g2035 | ATGGCGGAACCAGCAGCAGAGCCTAAGGCATTACCCGAACCCGAAAAGAAGAAGGAACAGAGCCTTCCTTTCTACCAACTCTTCTCTTTTGCAGACAAATATGACTGGTTTCTCATGATCCTCGGTAGTTTCGGCGCCATTGTCCACGGCTCTTCCATGCCTGTTTTTTTCCTTCTTTTCGGCGAAATGGTTAACGGCTTCGGCAAAAACCAATCCAATTTTCACAAAATGACAGCAGAAGTCTCTAAGTATGCTCTGTATTTTGTCTACTTGGGTCTCATTGTCTGTTTCTCATCCTACGCCGAGATCGCATGTTGGATGTACACAGGGGAGAGGCAAGTGAGTACATTGAGAAAGAAGTATTTAGAAGCCGTTTTGAAACAAGATGTTGGATTCTTCGACACTGACGCCAGAACAGGGGATGTTGTTTTTAGTGTTTCAACAGACACTCTTCTTGTACAAGATGCAATCAGCGAGAAGGTGGGGAACTTCATTCACTATCTTTCGACGTTTTTAGCTGGATTGGTTGTGGGTTTTGTGTCAGCATGGAGACTAGCTCTTCTGAGTATAGCAGTAATTCCAGGAATCGCTTTTGCTGGTGGTTTATATGCTTATACTCTCACTGGACTTACTTCAAAGAGTCGAGAATCCTATGCCAATGCCGGCATAATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTATGTTGGAGAAAGCAAAGCCCTGAATTCCTATTCAGATTCAATTCAAAACACATTGAAAATTGGTTACAAGGCAGGAATGGCTAAGGGGCTGGGTCTAGGTTGTACCTATGGCATTGCTTGTATGTCTTGGGCACTTGTCTTCTGGTATGCTGGAGTCTTCATCCGGAACGGCCAGTCCGATGGCGGCAAAGCCTTCACTGCTATATTCTCCGCCATCGTCGGTGGCATGAGCTTGGGGCAGTCATTTTCCAATTTGGGAGCATTCAGCAAAGGGAAAGCAGCAGGGTACAAATTGATGGAGATTATCAAACAGAGGCCTACAATTATTCAAGACCCATTAGATGGGAAATGTTTGGGTGAAGTTAATGGCAACATTGAGTTCAAAGATGTCACCTTTAGCTATCCATCCAGGCCGGACGTGATGATCTTTAGGGATTTCTCCATTTTTTTCCCTGCCGGGAAGACGGTGGCTGTCGTCGGTGGTAGCGGTTCCGGGAAAAGCACTGTTGTCTCTCTCATTGAAAGATTCTACGATCCCAATCAAGGGCAGGTTTTACTAGACAATGTAGACATCAAGACACTGCAATTGAAATGGCTAAGAGATCAAATTGGTCTAGTGAATCAGGAACCGGCTCTGTTTGCAACCACCATATACGAAAACATTCTCTACGGAAAACCCGATGCGACGATGGCGGAGGTGGAAGCTGCTGCGGCTGCAGCCAACGCTCATAGCTTCATCACATTGCTCCCCAATGGCTACGACACCCAAGTGGGCGAAAGAGGATTACAACTCTCCGGTGGACAAAAACAGAGGATTGCCATAGCCAGAGCAATGTTGAAGAACCCCAAAATCCTTCTCCTCGATGAAGCCACCAGCGCACTCGATGCAGGCTCTGAGAGCATAGTTCAAGAAGCTTTAGACCGTTTAATGGTCGGAAGAACAACAGTGGTGGTTGCACATCGATTATCAACAATAAGAAATGTCGATTCAATTGCAGTTATACAACAGGGGCAGGTAGTCGAAACAGGAACTCACGAAGAACTAATCGCTAAATCCGGTGCTTATTCCTCGTTAATTCGATTCCAAGAAATGGTTCGAAATAGAGAATTCTCAAACCCATCGACCCGTCGAACACGATCTTCACGACTGAGTCATTCGTTATCGACAAAATCGTTAAGCCTCCGCTCCGGTAGCCTCAGGAATTTGAGTTATTCGTATAGCACCGGCGCCGATGGGAGAATCGAAATGGTCTCAAACGCCGAAACTGACCGGAAAAACCCAGCCCCCGATGGCTATTTCATTCGTCTTCTTAAACTGAACGGCCCCGAATGGCCGTATTCGATAATGGGCGCTGTTGGGTCTGTTCTCTCTGGTTTCATCAGTCCAACATTTGCCATTGTTATGAGTAACATGATCGAGGTCTTCTATTACAGAAATTCATCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTACATTGGAATTGGGGTTTACGCAGTGGTAGCTTATCTAATTCAGCATTATTTCTTTACAATCATGGGTGAGAATCTCACTACCAGGGTCAGAAGAATGATGCTCGCAGCGATTTTGAGGAATGAAGTGGGATGGTTCGATGAAGAAGAACACAACTCAAGTTTAGTAGCAGCAAGATTGGCTACTGATGCAGCTGATGTAAAATCCGCCATTGCTGAAAGAATATCAGTGATACTACAAAATATGACTTCACTCTTCACTTCTTTCATAGTTGCATTCATTGTTGAATGGAGAGTTTCTCTTCTCATCCTTGCAGCCTTCCCTCTACTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTAAAAGGATTTGCTGGGGATACTGCTAAGGCCCACGCAAAGACAAGTATGATTGCAGGGGAAGGTGTGAGTAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGATAAGATCCTTTCTCTGTTCCGCCACGAGCTTCGTGTCCCACAACGACAGAGTCTCCGCCGGAGCCAAACGGCAGGTGTCCTTTTCGGTATCTCACAGCTAGCTCTATATGCCTCTGAAGCTTTAGTTCTATGGTATGGTGTCCATTTGGTCAGCAATGGTGGATCAACATTCTCCAAAGTGATCAAAGTCTTTGTTGTCTTGGTTGTTACTGCCAATTCTGTGGCGGAGACTGTTAGTCTTGCTCCTGAGATCATTAGAGGTGGCGAATCAATTGGTTCTGTTTTCTCAATTCTCGATCGCCCGACGAGGATCGACCCTGATGATCCTGAGGCAGAGACTGTTGAGACGCTTCGTGGGGAAATTGAACTCCGACATGTTGACTTCGCATACCCGTCTCGACCTGATGTCATGGTGTTTAAGGATCTTAATTTGAGGATCAGGGCTGGTCAGAGCCAGGCATTGGTTGGAGCCAGTGGATCAGGGAAGAGTTCAGTGATTGCTTTGATTGAGAGATTCTATGATCCGCTTGCCGGGAAAGTTATGATCGACGGGAAGGACATTCGACGCCTGAACTTGCAATCCTTGAGGCTGAAAATTGGTTTGGTACAGCAAGAGCCAGCCTTATTTGCAGCCAGCATTTTTGACAATATTGCATATGGAAAAGATGGAGCAACAGAGGCAGAAGTAATAGAGGCAGCAAGAGCAGCCAATGTGCATGGCTTTGTAAGTGGACTTCCTGATGGCTACAAGACACCAGTTGGGGAAAGAGGCGTTCAACTCTCTGGTGGCCAAAAACAACGCATAGCTATTGCCAGAGCCGTTCTCAAGGACCCCACAATCCTCCTCCTCGACGAAGCTACCAGTGCCCTCGACGCCGAGTCCGAGTGTGTGCTGCAAGAAGCTCTCGAAAGGCTCATGAGGGGCCGGACCACGGTGGTCGTGGCACATCGCCTGTCCACAATCAGGGGTGTGGACTGCATTGGCGTGGTCCAAGACGGTCGCATTGTCGAGCAAGGCAGCCATAATGAGCTGCTAAGCCGAGCCGAGGGGGCTTACTCAAGGCTCTTGCAGCTGCAACACCAACACATATGA | 3753 | 46.87 | MAEPAAEPKALPEPEKKKEQSLPFYQLFSFADKYDWFLMILGSFGAIVHGSSMPVFFLLFGEMVNGFGKNQSNFHKMTAEVSKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDSIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQRPTIIQDPLDGKCLGEVNGNIEFKDVTFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATMAEVEAAAAAANAHSFITLLPNGYDTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFIRLLKLNGPEWPYSIMGAVGSVLSGFISPTFAIVMSNMIEVFYYRNSSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELRVPQRQSLRRSQTAGVLFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESIGSVFSILDRPTRIDPDDPEAETVETLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPLAGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVVQDGRIVEQGSHNELLSRAEGAYSRLLQLQHQHI | 1250 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 34649838 | 34656147 | + | CcPI632755_09g020350.1 | Cco09g2035 | 188492 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g2035 | 1250 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 40 | 328 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cco09g2035 | 1250 | CDD | ABC_MTABC3_MDL1_MDL2 | 363 | 600 | - | - | |
| Cco09g2035 | 1250 | PANTHER | ABC TRANSPORTER B FAMILY | 9 | 621 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Cco09g2035 | 1250 | Gene3D | ABC transporter type 1, transmembrane domain | 975 | 1248 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cco09g2035 | 1250 | Gene3D | ABC transporter type 1, transmembrane domain | 665 | 974 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cco09g2035 | 1250 | FunFam | ABC transporter B family member 1 | 26 | 360 | - | - | |
| Cco09g2035 | 1250 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 363 | 599 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco09g2035 | 1250 | ProSitePatterns | ABC transporters family signature. | 1147 | 1161 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco09g2035 | 1250 | SUPERFAMILY | ABC transporter transmembrane region | 673 | 993 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cco09g2035 | 1250 | FunFam | ABC transporter B family member 1 | 665 | 974 | - | - | |
| Cco09g2035 | 1250 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 39 | 336 | - | - | |
| Cco09g2035 | 1250 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1010 | 1244 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco09g2035 | 1250 | Gene3D | - | 353 | 601 | IPR027417 | - | |
| Cco09g2035 | 1250 | Gene3D | - | 998 | 1247 | IPR027417 | - | |
| Cco09g2035 | 1250 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 675 | 991 | - | - | |
| Cco09g2035 | 1250 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 998 | 1246 | IPR027417 | - | |
| Cco09g2035 | 1250 | Pfam | ABC transporter transmembrane region | 39 | 312 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cco09g2035 | 1250 | Pfam | ABC transporter transmembrane region | 686 | 956 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cco09g2035 | 1250 | Gene3D | ABC transporter type 1, transmembrane domain | 26 | 615 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cco09g2035 | 1250 | FunFam | ABC transporter B family member 19 | 998 | 1247 | - | - | |
| Cco09g2035 | 1250 | CDD | ABC_MTABC3_MDL1_MDL2 | 1008 | 1246 | - | - | |
| Cco09g2035 | 1250 | Pfam | ABC transporter | 1027 | 1175 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco09g2035 | 1250 | ProSitePatterns | ABC transporters family signature. | 502 | 516 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco09g2035 | 1250 | FunFam | ABC transporter B family member 19 | 353 | 601 | - | - | |
| Cco09g2035 | 1250 | Pfam | ABC transporter | 383 | 530 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cco09g2035 | 1250 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 357 | 600 | IPR027417 | - | |
| Cco09g2035 | 1250 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 686 | 973 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cco09g2035 | 1250 | SMART | AAA_5 | 1035 | 1221 | IPR003593 | GO:0016887(InterPro) | |
| Cco09g2035 | 1250 | SMART | AAA_5 | 390 | 582 | IPR003593 | GO:0016887(InterPro) | |
| Cco09g2035 | 1250 | SUPERFAMILY | ABC transporter transmembrane region | 27 | 349 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g1755 | Cco-Chr1:30329720 | Cco09g2035 | Cco-Chr9:34649838 | 9.10E-96 | dispersed | |
| Cco02g0853 | Cco-Chr2:9919398 | Cco09g2035 | Cco-Chr9:34649838 | 1.70E-263 | dispersed | |
| Cco02g0854 | Cco-Chr2:9933209 | Cco09g2035 | Cco-Chr9:34649838 | 8.70E-268 | dispersed | |
| Cco05g1787 | Cco-Chr5:26532914 | Cco09g2035 | Cco-Chr9:34649838 | 0.00E+00 | dispersed | |
| Cco05g2873 | Cco-Chr5:36342965 | Cco09g2035 | Cco-Chr9:34649838 | 7.70E-287 | dispersed | |
| Cco09g0118 | Cco-Chr9:1040550 | Cco09g2035 | Cco-Chr9:34649838 | 9.60E-282 | dispersed | |
| Cco09g0802 | Cco-Chr9:7488796 | Cco09g2035 | Cco-Chr9:34649838 | 7.80E-08 | dispersed | |
| Cco09g1181 | Cco-Chr9:11672306 | Cco09g2035 | Cco-Chr9:34649838 | 0.00E+00 | dispersed | |
| Cco09g2035 | Cco-Chr9:34649838 | Cco11g1372 | Cco-Chr11:26559946 | 2.5e-310 | dispersed | |
| Cco09g2035 | Cco-Chr9:34649838 | Cco10g1994 | Cco-Chr10:33466359 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g2035 | K05658 | - | csv:101212585 | 2281.14 |