Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2039 ATGGCTTCCCCTCACCATTCCCATAGCTTCATGTTCCAATCCCGCCCCGCCGATCACCACGAATACGTCCCCTCCGCTTCCTTCAACGCCATCCCCTCCTGCCCTCCTCACCTCTATTTTCACGATGGAGTGGTCCCAGTGATGATGAAGAGATCGATGTCATTTTCGGGAGTCGAAAACGGGTGCGAGGAAGTGAATGGCGACGAGGGGTTATCAGACGATGGATTGGCATTGGGAGAGAAGAAGAAGCGATTAAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGTTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTAGCCAAAGCTTTGGGGTTGCAGCCAAGACAGATTGCTATTTGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAGTTGGAGAGAGATTATGAAGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGCTATTAGCATTAAAAACCAAAGACTCCGGCGAGGCAGCGGGGGGCGGCGCCACCATGAACCTAAAGAAAGAAAACGAACGCTGTTGGAGCAGCGACAACAGTTGCGACATTAATCTCGACATCTCAAAGACACAAGCACCAATAAACGGCAGCGGCAGTGGTGGCGGAGGTAGAGCATGTTCTCAACCAGGAATAATCAAAGATCTTTTCCCATCGGCGGCGTTCCGATCCGCCGCCATAACACAGCTGCTTCAACACGGGTCGTCCAGATCAACGGTGGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGCATTGAAGAACAACAACAAACTGCAGCAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA 915 48.31 MASPHHSHSFMFQSRPADHHEYVPSASFNAIPSCPPHLYFHDGVVPVMMKRSMSFSGVENGCEEVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGEAAGGGATMNLKKENERCWSSDNSCDINLDISKTQAPINGSGSGGGGRACSQPGIIKDLFPSAAFRSAAITQLLQHGSSRSTVDHPQVIQEESFSQMFNGIEEQQQTAAAAGFWPWSSDQNSHFH 304
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 34764476 34767255 + CcPI632755_09g020390.1 Cco09g2039 188496
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2039 304 Gene3D - 77 144 - -
Cco09g2039 304 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Cco09g2039 304 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco09g2039 304 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677(InterPro)
Cco09g2039 304 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677(InterPro)
Cco09g2039 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 207 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cco09g2039 304 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g2039 304 ProSiteProfiles 'Homeobox' domain profile. 80 136 IPR001356 GO:0003677(InterPro)
Cco09g2039 304 SUPERFAMILY Homeodomain-like 79 138 IPR009057 -
Cco09g2039 304 Coils Coil 128 169 - -
Cco09g2039 304 SMART HOX_1 79 140 IPR001356 GO:0003677(InterPro)
Cco09g2039 304 Pfam Homeodomain 81 134 IPR001356 GO:0003677(InterPro)
Cco09g2039 304 CDD homeodomain 81 137 IPR001356 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1619 Cco-Chr4:31509962 Cco09g2039 Cco-Chr9:34764476 3.30E-25 dispersed
Cco09g2039 Cco-Chr9:34764476 Cco10g0805 Cco-Chr10:16279963 3.70E-26 dispersed
Cco05g2715 Cco-Chr5:35056980 Cco09g2039 Cco-Chr9:34764476 1.20E-51 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60001 PF00046 Homeodomain 2.90E-15 CL0123 Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2039 K09338 - csv:101212093 565.459