Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2041 ATGGGTTTGGCACCTAATGATTCCAAGCTCGAGACATGGATTGAGGGGAAGTCAAAAACAGCTAGCGAGAAGAAGAAGAAGAAGGAGAATGAGTTGGAGGAGGAGACTGGATGTTGGGTTAAGTTGAAGTTCATAGGGAGTTGCATTCCTTCTAGATCAAAGGTTGATAGTTCTCTGAGTGGATCAAAGGTCGATAGCTTCATCAGTGGCACCAGTACCCATTGCGATAGTAAACCTAAACTTGACGAAAAAAGAGATATTCTGGTTACTGCATTGGGGTCATCAGCGACAACTGATAATGCTGAAAGTAGTTCGTCCACGCCCAAGCTCAGTGCAGAGCTGAAGGTTGCTTCTCGGCTTCGTAAGTTCACTTTTAATGAGCTTAAGTTAGCCACAAGAAATTTCCGACCTGAGAGCCTTCTTGGCGAGGGAGGTTTTGGTTGTGTTTTCAAAGGATGGATTGAGGAGAATGGAACTGCTCCTGCTAAACCTGGAACTGGGCTTACAGTTGCAGTCAAGACTCTTAATCATGACGGCCTACAAGGTCACAAGGAGTGGATGGCTGAAGTTAACTTCCTCGGTGACCTCAACCATTCTAATCTTGTAAGATTGATTGGTTGCTGCATTGAAGATGATCAAAGGTTATTAGTTTATGAGTTCATGCCTCGTGGAAGTTTGGAGAATCACCTCTTCAGAAGGCCCTTGCCACTTCCTTGGTCTATTAGATTGAAAATTGCACTTGGTGCTGCTAAAGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTGATATATCGTGATTTTAAAACGTCTAATATTTTACTAGATGCGGACTACAATGCTAAACTCTCAGATTTTGGACTCGCAAAAGATGGTCCTGAGGGTGACAAAACTCATGTTTCAACTCGGGTTATGGGAACCTATGGTTATGCAGCTCCAGAATATGTGATGACTGGGCATTTGACATCAAAAAGCGATGTCTACAGTTTTGGAGTTGTCTTGCTTGAAATGCTAACCGGTCGAAGATCGATGGATAAAAATAGACCAAATGGGGAGCACAACCTTGTTGAATGGGCTAGACCCTTGCTTGGAGACAAGAGGAAGTTCTACCGGCTGATAGATCCTCGCCTTGAATGTCACTTCTCGATCAAAGGTGCACAAAAAGCTGCCGAGCTTGCAGCTCACTGCCTTAGTAGAGATCCTAAAGCCAGACCTATGATGAGTGAAGTTGTTGAAATTTTAAAACCTTTGCCAAACCTCAAGGACATGGCAAGTTCTTCCTATTACTTCCAAACCATGCAAGCAGACCGTGCCAGTCACCGAAACCTGACAGGAGATAACCTTAATAACCAACTCGAGCAAATTTCGGGTGGGATATGGAGGAGAGGGGATGAAGTTAAAAGGAAGGCTATATATATCGACTCGGAGGTGAAGTTCGATGCTGATAACATAGGTTGCGGGGGGGAACCACATCTGATCGAAATATCAACACAAGGCCACTTTCTTTCTTTCTGTTAA 1521 43.98 MGLAPNDSKLETWIEGKSKTASEKKKKKENELEEETGCWVKLKFIGSCIPSRSKVDSSLSGSKVDSFISGTSTHCDSKPKLDEKRDILVTALGSSATTDNAESSSSTPKLSAELKVASRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLNHSNLVRLIGCCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRLKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDKRKFYRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKARPMMSEVVEILKPLPNLKDMASSSYYFQTMQADRASHRNLTGDNLNNQLEQISGGIWRRGDEVKRKAIYIDSEVKFDADNIGCGGEPHLIEISTQGHFLSFC 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34783914 34789211 - CcPI632755_09g020410.1 Cco09g2041 188498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2041 506 Pfam Protein tyrosine and serine/threonine kinase 139 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2041 506 MobiDBLite consensus disorder prediction 12 34 - -
Cco09g2041 506 MobiDBLite consensus disorder prediction 1 34 - -
Cco09g2041 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2041 506 FunFam Probable serine/threonine-protein kinase PBL8 221 436 - -
Cco09g2041 506 Gene3D Transferase(Phosphotransferase) domain 1 221 438 - -
Cco09g2041 506 CDD STKc_IRAK 141 418 - -
Cco09g2041 506 SUPERFAMILY Protein kinase-like (PK-like) 112 415 IPR011009 -
Cco09g2041 506 FunFam Serine/threonine-protein kinase BIK1 102 220 - -
Cco09g2041 506 ProSitePatterns Protein kinases ATP-binding region signature. 141 173 IPR017441 GO:0005524(InterPro)
Cco09g2041 506 PANTHER OS01G0588500 PROTEIN-RELATED 106 419 IPR050823 -
Cco09g2041 506 Gene3D Phosphorylase Kinase; domain 1 110 220 - -
Cco09g2041 506 ProSiteProfiles Protein kinase domain profile. 135 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1321 Cco-Chr6:23481554 Cco09g2041 Cco-Chr9:34783914 1.30E-138 dispersed
Cco09g1313 Cco-Chr9:14841420 Cco09g2041 Cco-Chr9:34783914 1.30E-91 dispersed
Cco09g2041 Cco-Chr9:34783914 Cco11g0344 Cco-Chr11:3497078 7.50E-141 dispersed
Cco10g2276 Cco-Chr10:35605174 Cco09g2041 Cco-Chr9:34783914 2.00E-62 transposed
Cco05g2725 Cco-Chr5:35145913 Cco09g2041 Cco-Chr9:34783914 1.10E-189 wgd
Cco08g1040 Cco-Chr8:22218677 Cco09g2041 Cco-Chr9:34783914 4.00E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87115 PF07714 PK_Tyr_Ser-Thr 4.40E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2041 - - - 0.0