Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2045 ATGGGGGACAAGGATGAAGTTTTGGAAGCTGTTGTGAAGGAAGCTGTTGATTTGGAGAACGTTCCACTTGAAGAGGTTTTTCAGACGTTGAGATGTAATACAAATGGTTTGACAACAGAGGCGGCTCATGAGAGGTTGGCCATTTTTGGGCACAATAAGCTTGAAGAAAAGAAGGAGAGTAAGGTTCTAAAGTTCTTGGGATTTATGTGGAACCCTCTCTCATGGGTCATGGAAGCTGCAGCTATAATGGCTATTGCTCTAGCTAATGGAGGAGGAAAACCTCCAGATTGGCAGGATTTTGTTGGGATCATAACCTTGTTAATTATCAATTCAACTATTAGTTTTATAGAGGAGAACAATGCTGGAAATGCTGCGGCTGCTCTCATGGCTCGTCTTGCACCGAAAGCTAAGGTTCTTAGAGATGGGAAGTGGGTTGAGGAGGAGGCATCAGTCCTTGTTCCTGGTGATATAATTAGCGTCAAGCTCGGTGACATTATTCCTGCTGATGCTCGCCTCCTTGAAGGTGATCCATTAAAGATCGATCAATCTGCTCTCACAGGTGAATCACTTCCTGTCACTAAAGGCCCCGGCGACAGTGTGTATTCAGGTTCAACATGCAAACAGGGAGAAATTGAAGCAGTTGTTATTGCTACTGGTGTTCATACATTCTTTGGCAAAGCTGCTCATCTTGTAGACTCCACAAATCAAGTGGGTCACTTCCAAAAGGTCTTGACTGCTATTGGGAATTTCTGCATATGTTCCATTGCTGTTGGCATGATTGTTGAGATTATTGTCATGTACCCAATCCAACATAGGGCTTACCGACCAGGGATTGACAATCTCCTGGTTCTTCTCATTGGAGGAATTCCCATCGCAATGCCAACCGTTTTGTCGGTCACAATGGCGATTGGATCACACCGTCTTTCTCAACAGGGAGCTATCACTAAACGAATGACTGCAATAGAAGAAATGGCTGGAATGGACGTGCTCTGTAGCGACAAAACAGGAACACTGACCTTAAATAAGCTTACTGTTGACAAGACTCTGATAGAGGTTTTTGCCAAGGGAGTGGACGTGGATACTGTCGTTCTCATGGCAGCTCGAGCCTCTCGAGTTGAAAATCAAGACGCAATAGATGCTGCTATTGTAGGGATGTTAAGTGATCCAAAGGAGGCACGAGCAGGCATTCAAGAGGTTCACTTCCTTCCATTCAACCCAACTGACAAGCGAACTGCCCTGACATACATTGATGCCGATGGAAAAATGCATCGAGTCAGCAAGGGTGCTCCAGAGCAGATCTTGAATCTTGCACACAACAAATCAGAGATAGAAAGAAGGGTTCATGCTGTGATTGATAAGTTCGCAGAGCGAGGATTGCGCTCTCTTGCAGTGGCATACCAAGAGGTTCCAGATGGAAGAAAGGAGAGTCATGGAGGGCCATGGCAATTCATCGGCCTAATGCCTCTGTTTGACCCACCTAGACATGACAGTGCAGAGACAATTAGGAGAGCTTTGAATCTTGGTGTAAATGTTAAAATGATCACAGGTGATCAACTAGCTATAGGAAAGGAAACAGGACGTCGGCTCGGGATGGGAACAAATATGTACCCTTCATCTGCATTATTAGGAAAGAACAAAGATGAATCAACTTCTGGATTGCCTGTTGATGACTTAATTGAGAAGGCTGATGGATTTGCTGGTGTATTTCCTGAGCACAAATATGAGATTGTGAAACGTTTACAAGCTCGGAAACATATATGTGGAATGACTGGAGATGGTGTTAATGATGCCCCCGCTCTTAAAAAGGCCGATATTGGCATAGCAGTTGCAGATGCAACTGATGCAGCTCGTAGTGCTTCTGACATTGTTCTTACAGAGCCTGGTCTTAGTGTTATTATAAGTGCTGTTCTAACCAGTAGGGCCATCTTCCAGAGGATGAAAAATTACACGATTTATGCAGTTTCAATTACAATTCGTATCGTGCTTGGATTCATGTTGCTGGCCCTTATATATCAATTTGACTTCCCACCTTTCATGGTTCTAATCATTGCTATTCTTAATGATGGTACCATAATGACAATATCAAAGGATAGAGTGAAACCATCTCCTCTGCCAGATAGCTGGAAACTGGCAGAGATTTTTGGCACTGGAATTATACTTGGAGGTTATTTGGCTATGATGACTGTTATTTTCTTCTGGGCGGCTTACCGAACTGACTTCTTTCCTCGTACATTTGGGGTTTCTAGCCTTCAGAAGAAGGACGAGGATGATTTCAGAAAGCTAGCTTCAGCAATATACCTGCAAGTGAGTACAATTAGTCAGGCCCTCATCTTTGTGACACGATCTCGGAGTTGGTCATTTGTGGAGCGCCCTGGCCTTTTATTGGTTGCAGCCTTTGCTATTGCTCAGCTAATTGCTACACTGATTGCTGTTTATGCAAACTGGAGTTTTGCTGCAATAGAAGGAATTGGCTGGGGCTGGGCTGGTGTTGTTTGGCTTTACAACCTCATCTTTTATTTCCCACTTGATTTAATCAAGTTTGCAATCAGATATGCCATTAGTGGTAGAGCATGGGACCTTGTCATTGAACAAAGGATTGCCTTTACAAGGAAGAAAGATTTTGGGAAGGAAGAGCGTGAGCTTAAATGGGCACATGCACAAAGGACCCTTCATGGGCTGCAGCCACCTGAGGCTAAGATGTTCTCCGAGCGCACAACTTATACAGAACTCAATCAAATGGCAGAGGAAGCAAAACGACGAGCTGAAATTGCAAGGCTGAGAGAGCTGCACACACTGAAAGGTCACGTTGAATCAGTGGTGAGGCTGAAAGGTCTTGATATCAACACGATTCAGCAGTCATACACGCTCCATGATTATTGCCTGGAAACTGCAGAAGTTATTGAAAGGGTGATAATGTATGCAAAGGTAACTGTGAGGTGTGCAGGGGTGAATATATATACTTTTGTCGTCAATAAAAGAAAAACCTGTGGCATTTTTGCTAGAGTTCCGTATGAGCTATTGGGAAAATAA 3030 43.86 MGDKDEVLEAVVKEAVDLENVPLEEVFQTLRCNTNGLTTEAAHERLAIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWVEEEASVLVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQHRAYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLIEVFAKGVDVDTVVLMAARASRVENQDAIDAAIVGMLSDPKEARAGIQEVHFLPFNPTDKRTALTYIDADGKMHRVSKGAPEQILNLAHNKSEIERRVHAVIDKFAERGLRSLAVAYQEVPDGRKESHGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGKNKDESTSGLPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIYQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFGTGIILGGYLAMMTVIFFWAAYRTDFFPRTFGVSSLQKKDEDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVAAFAIAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLIFYFPLDLIKFAIRYAISGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLQPPEAKMFSERTTYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDINTIQQSYTLHDYCLETAEVIERVIMYAKVTVRCAGVNIYTFVVNKRKTCGIFARVPYELLGK 1009
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 34808820 34815197 - CcPI632755_09g020450.1 Cco09g2045 188502
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2045 1009 Coils Coil 907 927 - -
Cco09g2045 1009 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Cco09g2045 1009 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Cco09g2045 1009 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Cco09g2045 1009 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Cco09g2045 1009 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Cco09g2045 1009 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Cco09g2045 1009 Gene3D - 96 821 - -
Cco09g2045 1009 FunFam Plasma membrane ATPase 484 638 - -
Cco09g2045 1009 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 852 IPR023298 -
Cco09g2045 1009 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco09g2045 1009 PRINTS H+-transporting ATPase (proton pump) signature 621 646 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco09g2045 1009 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco09g2045 1009 PRINTS H+-transporting ATPase (proton pump) signature 766 787 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco09g2045 1009 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco09g2045 1009 NCBIfam HAD-IC family P-type ATPase 565 673 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco09g2045 1009 NCBIfam HAD-IC family P-type ATPase 103 351 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco09g2045 1009 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Cco09g2045 1009 Gene3D - 328 627 IPR023214 -
Cco09g2045 1009 Gene3D - 905 956 - -
Cco09g2045 1009 CDD P-type_ATPase_H 36 847 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cco09g2045 1009 FunFam Plasma membrane ATPase 343 490 - -
Cco09g2045 1009 SFLD C1.7: P-type atpase like 313 641 - -
Cco09g2045 1009 Gene3D - 343 490 IPR023299 GO:0000166(InterPro)
Cco09g2045 1009 SUPERFAMILY HAD-like 327 637 IPR036412 -
Cco09g2045 1009 Pfam E1-E2 ATPase 132 310 - -
Cco09g2045 1009 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 812 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cco09g2045 1009 FunFam ATPase 4 plasma membrane-type 575 821 - -
Cco09g2045 1009 Pfam haloacid dehalogenase-like hydrolase 327 604 - -
Cco09g2045 1009 FunFam Plasma membrane ATPase 134 218 - -
Cco09g2045 1009 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Cco09g2045 1009 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Cco09g2045 1009 SFLD p-type atpase 313 641 IPR044492 -
Cco09g2045 1009 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Cco09g2045 1009 Gene3D - 134 218 - -
Cco09g2045 1009 PANTHER CALCIUM-TRANSPORTING ATPASE 19 889 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1570 Cco-Chr1:28419625 Cco09g2045 Cco-Chr9:34808820 0.00E+00 dispersed
Cco09g2045 Cco-Chr9:34808820 Cco11g1233 Cco-Chr11:24483315 0.00E+00 dispersed
Cco06g1846 Cco-Chr6:28719686 Cco09g2045 Cco-Chr9:34808820 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2045 K01535 - csv:101211115 1779.61