Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2058 ATGAAGATCTCCAACTTCTTCCTCACATGGGTTTCTCTGAATCATCTTCTTCTTTTTCTTCTTCTACTTTGTGTTTCTCCATCTTTTTCTGTAGTTCCAGAAGACGATATAAGGTGTCTTCGAGGGGTTAAGAATGCGCTTGTTGATCCTCTCGGAAGGCTTAGTTCATGGGATTTCAAGAACACATCCGTTGGTCATCTCTGCAACAAATTCGTTGGTCTCTCCTGCTGGAACGACCGTGAGAATCGCATTCTCAGCCTCGAGCTTAAAGATATGAAGCTCTCCGGTTCGATTTCTGAAGACTTACAGTACTGTGTAAGCCTGCAGAAACTGGATCTGTCCGGCAATAGCTTTTCCGGCGCGATCCCGCCGCATATTTGTGAGTGGCTTCCGTATTTGGTTAGCATGGATTTGTCGAACAATCAATTTACCGGTCCTATTCCGGCTGATCTCGCTAGATGTTCTTATTTGAATTCGTTGATTTTGTCTGATAATGAGCTTTCTGGTACAATACCAGTTGAGCTCACGAGTCTGGGTAGACTTAACAAATTTTCTGTTGCGAACAATCAACTCACTGGTACGATTCCTTCATTTTTTGATAAATTTGGGAAGGAGGATTTTGATGGGAACAGTGACTTATGTGGAGGGCCTGTTGGATCTAGTTGTGGTGGGTTGAGCAAGAAGAATCTTGCGATTATTATAGCTGCTGGTGTGTTTGGTGCTGCGGCTTCTCTGTTGTTAGGTTTTGGGTTGTGGTGGTGGTATCATTCTAGAATGAACATGAAGAGGAGAAGGGGATATGGGGATGGGATTAGTGGGGATTGGGCTGATAGATTGAGAGCCTATAAGCTTGTTCAAGTTTCCTTGTTTCAAAAGCCTCTTGTGAAAGTTAAGTTGGCTGATTTGATGGCTGCTACTAATAATTTCAATTCTGAAAACATCATAGTTTCTTCTAGAACTGGGACTACTTATAGAGCTGTTCTTCCAGATGGCTCTGTGCTTGCTATAAAGCGGCTCAATACTTGCAAGCTCGGTGAGAAGCTGTTTCGAATGGAGATGAACAGGTTAGGATCGATCAGACACCCGAATTTGACACCCCTTTTGGGATTCTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTATAAGTATATGTCTAATGGGACTTTGTCCTCTTTGTTACATGGAAATGATGAGATATTGGATTGGCCAACTAGGTTTAGGATTGGTCTGGGTGCAGCTAGAGGTCTTGCTTGGCTTCACCATGGATGCCAACCTCCATTCATGCATCAAAACATATGTTCTAGTGTAATTCTTGTGGATGAAGACTATGATGCTAGGATCATGGATTTTGGATTGGCAAGGTTGATGGCTTCAGATTCTCATGACAGTAGTTTTGTTAATGGAGACTTAGGGGAACTTGGTTACGTTGCTCCTGAGTACCCGAGCACCATGGTTGCATCTTTGAAGGGGGATGTTTATGGATTTGGAGTTGTGCTTTTGGAGTTGATCACTGGCCAAAAACCTCTAGAAGTCACCAAAGCAGAGGAAGGTTATAAGGGTAACTTGGTAGATTGGGTTAATCAGCTGAGTATGTCGGGTCGAATTAAGGATGTCATTGATAAAGATCTTTGTGGGAAAGGGAACGATGAGGAAATCTTACAATTTCTGAAAATTACAATGAACTGCATTGTTTCTCGGCCCAAAGACAGGTGGTCTATGTATCAGGTTTATCAATCAATGAAAACCATGGCTAAAGACTACAGTTTCCCTGAACCAGATGATGAATTCCCACTTTTACTTGGCAAGGGAGATAATGAACCCATGTAG 1827 42.53 MKISNFFLTWVSLNHLLLFLLLLCVSPSFSVVPEDDIRCLRGVKNALVDPLGRLSSWDFKNTSVGHLCNKFVGLSCWNDRENRILSLELKDMKLSGSISEDLQYCVSLQKLDLSGNSFSGAIPPHICEWLPYLVSMDLSNNQFTGPIPADLARCSYLNSLILSDNELSGTIPVELTSLGRLNKFSVANNQLTGTIPSFFDKFGKEDFDGNSDLCGGPVGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKRRRGYGDGISGDWADRLRAYKLVQVSLFQKPLVKVKLADLMAATNNFNSENIIVSSRTGTTYRAVLPDGSVLAIKRLNTCKLGEKLFRMEMNRLGSIRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLSSLLHGNDEILDWPTRFRIGLGAARGLAWLHHGCQPPFMHQNICSSVILVDEDYDARIMDFGLARLMASDSHDSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGVVLLELITGQKPLEVTKAEEGYKGNLVDWVNQLSMSGRIKDVIDKDLCGKGNDEEILQFLKITMNCIVSRPKDRWSMYQVYQSMKTMAKDYSFPEPDDEFPLLLGKGDNEPM 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34984188 34986014 - CcPI632755_09g020580.1 Cco09g2058 188515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2058 608 SUPERFAMILY Protein kinase-like (PK-like) 286 579 IPR011009 -
Cco09g2058 608 Pfam Leucine Rich Repeat 157 178 IPR001611 GO:0005515(InterPro)
Cco09g2058 608 Pfam Leucine Rich Repeat 107 128 IPR001611 GO:0005515(InterPro)
Cco09g2058 608 Pfam Leucine Rich Repeat 133 154 IPR001611 GO:0005515(InterPro)
Cco09g2058 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 384 602 - -
Cco09g2058 608 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Cco09g2058 608 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 83 582 IPR051564 GO:0016020(PANTHER)
Cco09g2058 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 271 383 - -
Cco09g2058 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 33 223 - -
Cco09g2058 608 Gene3D Transferase(Phosphotransferase) domain 1 384 594 - -
Cco09g2058 608 Gene3D Phosphorylase Kinase; domain 1 269 383 - -
Cco09g2058 608 Gene3D Ribonuclease Inhibitor 34 224 IPR032675 -
Cco09g2058 608 ProSiteProfiles Protein kinase domain profile. 309 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2058 608 Pfam Protein tyrosine and serine/threonine kinase 333 516 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2058 608 SUPERFAMILY L domain-like 33 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0774 Cco-Chr9:7107221 Cco09g2058 Cco-Chr9:34984188 4.60E-116 dispersed
Cco09g2058 Cco-Chr9:34984188 Cco09g0341 Cco-Chr9:3012592 4.00E-64 dispersed
Cco09g2058 Cco-Chr9:34984188 Cco05g0956 Cco-Chr5:8373359 2.70E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87116 PF07714 PK_Tyr_Ser-Thr 1.30E-29 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2058 - - - 0.0