Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g2079 | ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTTCATAGACACATTAAACACAACTGGGTTTTAGAGAAGGATTCTCCATCGGTTGCAGTTTCAGAGATAACTAATAGTCCAAGGCGGAAATGGCGGATCTTCAGTCGGTCATCTTCTTCCCCATTTCCGTCAAAACCCCAATTGAAGGAAATACCCAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGACCCAGTAATTGTCTCCTCTGGTCATACTTTTGAAGCTGCGTGTGTTCAGGTTTGTAAAGATTTAGGGTTGAAGCCGACTCTATTAGATGGTACGAAGCCGGATTTCTCCTCTGTAATTCCAAATCTGGCTCTCAAATCCACCATTTTCAATTGGTGTAAAAACTCCTCTTCTGAACACCCCAAACCCCTCGATTTCTCCTCCGCTGAAAAGCTTGTTCGTAAATTCATGGCGGCCCACAGCGAAAGCGATGAGGAATTGATTCAAGGGGTTGCAGAGAATCCTGTGGTTCGATTCAACCACGCCGCCACTGAAGTCACTCGTCGAACCTCTCATTTCCACTCGAGCTCAGATGAATCAGTAAGCGCCGCCGTTCCAACTCTGCCCCTTCCTCTTGCGACTCGGCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGACATCGAGATCATTGGTACTCTAAACTTACCCGAAGAAGAAGAGATCATCGCGAAGCTTAAAAGCCCTCAGGTTATTGAGATTGAAGAGGCTGTGACTACGCTGAGAAAAATCACAAGAACTCGAGAGGACACTAGGGTTCATCTCTGTTCTCCTCTGATTCTCTCTGCTCTTCGATCTCTCATCGTCTCAAGGTATACTGGCGTTCAAGTGAATTCAGTTGCAGCGCTTGTAAATCTATCATTAGAGAATTTGAACAAGGTGAAGATCGTACGGTCGGGGATTCTCCCCAATTTGATTGATGTTCTGAAAGGGGGTTCGCCGGAGGTTCAGGAACATGCTGCCGGCGCCATTTTCAGCTTAGCACTCGACGACGACAACAAGACGGCAATCGGCGTATTGGGTGCTCTGCCACCATTGATACGGCTGTTGGTATCCGAATCGGAGCAAACTCGGCACGACTCGGCTCTTGCTCTTTACCACTTATCGCACGTTCAGAGCAACCGTTCGAAGCTTGTGAAACTTGGTTCGGTGCCGGTTTTTCTCGGGATGGTGAAATCCCGCCACATGGCCGGCCGTATTTTGCTGATTTTGTGTAATTTAGCAGCGTGTTTTGAGGGCCGGGCGGCGTTGTTGGACTCCGGCGCTGTGGAGTGTTTGGTGGGGATGTTGAGGGAGAACGAGTTGGACTCCGAGTCGACCCGGGAGAGTTGTGTGGCGGTTCTGTTCGGACTCAGTTACGGCGGTTTGAGGTTCAAGGGTCTGGCAAAAACCGCCGGAGCAATGGATGTTTTCATGGCAATGGAGAAAAATGGAAGTGAGAGATCAAAAGAGAAGGTGAAGAGGATCATGGAGTATATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAACTGCTCGATTCAGGTTGTTTCGGCAGCCGAACTCGGTGTCGACTCAGTGCCGGAATGGACAGATCCACCGCCAACTCGTCCGAATTCTGA | 1656 | 48.97 | MEFQEGLMKFMVHRHIKHNWVLEKDSPSVAVSEITNSPRRKWRIFSRSSSSPFPSKPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGLKPTLLDGTKPDFSSVIPNLALKSTIFNWCKNSSSEHPKPLDFSSAEKLVRKFMAAHSESDEELIQGVAENPVVRFNHAATEVTRRTSHFHSSSDESVSAAVPTLPLPLATRPSCCSSSSSSDIEIIGTLNLPEEEEIIAKLKSPQVIEIEEAVTTLRKITRTREDTRVHLCSPLILSALRSLIVSRYTGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALDDDNKTAIGVLGALPPLIRLLVSESEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSRHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSYGGLRFKGLAKTAGAMDVFMAMEKNGSERSKEKVKRIMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRLSAGMDRSTANSSEF | 551 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 35193452 | 35195107 | + | CcPI632755_09g020790.1 | Cco09g2079 | 188536 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g2079 | 551 | ProSiteProfiles | U-box domain profile. | 61 | 135 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco09g2079 | 551 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 315 | 352 | IPR000225 | GO:0005515(InterPro) | |
Cco09g2079 | 551 | Pfam | Armadillo/beta-catenin-like repeat | 307 | 343 | IPR000225 | GO:0005515(InterPro) | |
Cco09g2079 | 551 | Pfam | Armadillo/beta-catenin-like repeat | 345 | 384 | IPR000225 | GO:0005515(InterPro) | |
Cco09g2079 | 551 | SMART | arm_5 | 263 | 303 | IPR000225 | GO:0005515(InterPro) | |
Cco09g2079 | 551 | SMART | arm_5 | 345 | 385 | IPR000225 | GO:0005515(InterPro) | |
Cco09g2079 | 551 | SMART | arm_5 | 425 | 468 | IPR000225 | GO:0005515(InterPro) | |
Cco09g2079 | 551 | SMART | arm_5 | 304 | 344 | IPR000225 | GO:0005515(InterPro) | |
Cco09g2079 | 551 | FunFam | RING-type E3 ubiquitin transferase | 42 | 136 | - | - | |
Cco09g2079 | 551 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 356 | 398 | IPR000225 | GO:0005515(InterPro) | |
Cco09g2079 | 551 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 135 | IPR013083 | - | |
Cco09g2079 | 551 | Pfam | U-box domain | 62 | 132 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco09g2079 | 551 | SUPERFAMILY | ARM repeat | 237 | 498 | IPR016024 | - | |
Cco09g2079 | 551 | SMART | Ubox_2 | 65 | 128 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco09g2079 | 551 | SUPERFAMILY | RING/U-box | 56 | 138 | - | - | |
Cco09g2079 | 551 | PANTHER | U BOX DOMAIN-CONTAINING | 47 | 509 | - | - | |
Cco09g2079 | 551 | FunFam | RING-type E3 ubiquitin transferase | 232 | 508 | - | - | |
Cco09g2079 | 551 | Gene3D | - | 232 | 507 | IPR011989 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g2079 | Cco-Chr9:35193452 | Cco11g0617 | Cco-Chr11:6635883 | 1.60E-11 | dispersed | |
Cco01g1435 | Cco-Chr1:26127504 | Cco09g2079 | Cco-Chr9:35193452 | 6.60E-79 | wgd | |
Cco06g1875 | Cco-Chr6:28967718 | Cco09g2079 | Cco-Chr9:35193452 | 9.90E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g2079 | - | - | - | 0.0 |