Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2079 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTTCATAGACACATTAAACACAACTGGGTTTTAGAGAAGGATTCTCCATCGGTTGCAGTTTCAGAGATAACTAATAGTCCAAGGCGGAAATGGCGGATCTTCAGTCGGTCATCTTCTTCCCCATTTCCGTCAAAACCCCAATTGAAGGAAATACCCAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGACCCAGTAATTGTCTCCTCTGGTCATACTTTTGAAGCTGCGTGTGTTCAGGTTTGTAAAGATTTAGGGTTGAAGCCGACTCTATTAGATGGTACGAAGCCGGATTTCTCCTCTGTAATTCCAAATCTGGCTCTCAAATCCACCATTTTCAATTGGTGTAAAAACTCCTCTTCTGAACACCCCAAACCCCTCGATTTCTCCTCCGCTGAAAAGCTTGTTCGTAAATTCATGGCGGCCCACAGCGAAAGCGATGAGGAATTGATTCAAGGGGTTGCAGAGAATCCTGTGGTTCGATTCAACCACGCCGCCACTGAAGTCACTCGTCGAACCTCTCATTTCCACTCGAGCTCAGATGAATCAGTAAGCGCCGCCGTTCCAACTCTGCCCCTTCCTCTTGCGACTCGGCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGACATCGAGATCATTGGTACTCTAAACTTACCCGAAGAAGAAGAGATCATCGCGAAGCTTAAAAGCCCTCAGGTTATTGAGATTGAAGAGGCTGTGACTACGCTGAGAAAAATCACAAGAACTCGAGAGGACACTAGGGTTCATCTCTGTTCTCCTCTGATTCTCTCTGCTCTTCGATCTCTCATCGTCTCAAGGTATACTGGCGTTCAAGTGAATTCAGTTGCAGCGCTTGTAAATCTATCATTAGAGAATTTGAACAAGGTGAAGATCGTACGGTCGGGGATTCTCCCCAATTTGATTGATGTTCTGAAAGGGGGTTCGCCGGAGGTTCAGGAACATGCTGCCGGCGCCATTTTCAGCTTAGCACTCGACGACGACAACAAGACGGCAATCGGCGTATTGGGTGCTCTGCCACCATTGATACGGCTGTTGGTATCCGAATCGGAGCAAACTCGGCACGACTCGGCTCTTGCTCTTTACCACTTATCGCACGTTCAGAGCAACCGTTCGAAGCTTGTGAAACTTGGTTCGGTGCCGGTTTTTCTCGGGATGGTGAAATCCCGCCACATGGCCGGCCGTATTTTGCTGATTTTGTGTAATTTAGCAGCGTGTTTTGAGGGCCGGGCGGCGTTGTTGGACTCCGGCGCTGTGGAGTGTTTGGTGGGGATGTTGAGGGAGAACGAGTTGGACTCCGAGTCGACCCGGGAGAGTTGTGTGGCGGTTCTGTTCGGACTCAGTTACGGCGGTTTGAGGTTCAAGGGTCTGGCAAAAACCGCCGGAGCAATGGATGTTTTCATGGCAATGGAGAAAAATGGAAGTGAGAGATCAAAAGAGAAGGTGAAGAGGATCATGGAGTATATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAACTGCTCGATTCAGGTTGTTTCGGCAGCCGAACTCGGTGTCGACTCAGTGCCGGAATGGACAGATCCACCGCCAACTCGTCCGAATTCTGA 1656 48.97 MEFQEGLMKFMVHRHIKHNWVLEKDSPSVAVSEITNSPRRKWRIFSRSSSSPFPSKPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGLKPTLLDGTKPDFSSVIPNLALKSTIFNWCKNSSSEHPKPLDFSSAEKLVRKFMAAHSESDEELIQGVAENPVVRFNHAATEVTRRTSHFHSSSDESVSAAVPTLPLPLATRPSCCSSSSSSDIEIIGTLNLPEEEEIIAKLKSPQVIEIEEAVTTLRKITRTREDTRVHLCSPLILSALRSLIVSRYTGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALDDDNKTAIGVLGALPPLIRLLVSESEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSRHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSYGGLRFKGLAKTAGAMDVFMAMEKNGSERSKEKVKRIMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRLSAGMDRSTANSSEF 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35193452 35195107 + CcPI632755_09g020790.1 Cco09g2079 188536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2079 551 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco09g2079 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 315 352 IPR000225 GO:0005515(InterPro)
Cco09g2079 551 Pfam Armadillo/beta-catenin-like repeat 307 343 IPR000225 GO:0005515(InterPro)
Cco09g2079 551 Pfam Armadillo/beta-catenin-like repeat 345 384 IPR000225 GO:0005515(InterPro)
Cco09g2079 551 SMART arm_5 263 303 IPR000225 GO:0005515(InterPro)
Cco09g2079 551 SMART arm_5 345 385 IPR000225 GO:0005515(InterPro)
Cco09g2079 551 SMART arm_5 425 468 IPR000225 GO:0005515(InterPro)
Cco09g2079 551 SMART arm_5 304 344 IPR000225 GO:0005515(InterPro)
Cco09g2079 551 FunFam RING-type E3 ubiquitin transferase 42 136 - -
Cco09g2079 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 356 398 IPR000225 GO:0005515(InterPro)
Cco09g2079 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
Cco09g2079 551 Pfam U-box domain 62 132 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco09g2079 551 SUPERFAMILY ARM repeat 237 498 IPR016024 -
Cco09g2079 551 SMART Ubox_2 65 128 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco09g2079 551 SUPERFAMILY RING/U-box 56 138 - -
Cco09g2079 551 PANTHER U BOX DOMAIN-CONTAINING 47 509 - -
Cco09g2079 551 FunFam RING-type E3 ubiquitin transferase 232 508 - -
Cco09g2079 551 Gene3D - 232 507 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2079 Cco-Chr9:35193452 Cco11g0617 Cco-Chr11:6635883 1.60E-11 dispersed
Cco01g1435 Cco-Chr1:26127504 Cco09g2079 Cco-Chr9:35193452 6.60E-79 wgd
Cco06g1875 Cco-Chr6:28967718 Cco09g2079 Cco-Chr9:35193452 9.90E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2079 - - - 0.0