Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2080 ATGGAGTTTCTCTTCTTCCTCCTCCTTTCCGTCTTCTCTCATTCCGCCTCCGCCGCTCTCTCCGCCGACTACTACCAGAATTCCTGCCCTGCATTTTCTCAGATCATCCGCGACACTGTCACCAACAAGCAAATCACCACCCCTACCACCGCCGCCGCCACACTCCGTCTCTTCTTCCACGACTGTCTCCCCAACGGCTGCGACGCCTCCATCCTCATCTCCTCCACCCCCTTCAACGTCGCCGAGCGCAACGCCGACGTCAACCTCTCCCTTCCCGGCGACGCCTTCGACGTTGTCGTCCGTGCTAAAACCGCCCTCGAACTCTCTTGCCCCAACACCGTCTCCTGCGCCGACATCCTCACTGCCGCCACTCGCGACCTCCTCACCATGGTTGGCGGCCCTTACTACACCGTCTTCCTCGGCCGCAAAGACGCCAAGGTTTCCAAAGCCTCCGCTATTGAAGGCTCTCTCCCTAGACCCACCATGTCCGTCTCTGAGATCATCAGAATTTTCGCCTCCAGAGGATTTTCCGTTCAGGAAATGGTAGCGTTAAGCGGCGCTCATTCAATTGGCTTCTCGCATTGTAAGGAGTTCGCCTCTGAGATCTTCAATTACAGCAAATCCCCGCCCTACGACAGCCATTACAACCCTCGATTCGCATTAGGGTTACAGCGAGCTTGCGCCGATTACCAGAAGAATCCAACTCTGTCGGTTTTTAACGACATTATGACGCCGAACAAATTCGACAACATGTATTTCAAGAATCTGCAGAAGGGGTTAGGGCTTTTGAAGTCCGATGGCGGATTGTACAGCGATCCAAGAACGAGGCCGTGGGTGGAGAAATATGCTGCCGATGAGAGTGTGTTCTTCGGGGCGTTTTCTCAAGCGATGGTGAAGCTTGGTGGCTATGGCGTCAAAGTGGGGAATGAAGGAGAAATCAGACGCAGGTGCGATGCCTTTAATTGA 966 54.55 MEFLFFLLLSVFSHSASAALSADYYQNSCPAFSQIIRDTVTNKQITTPTTAAATLRLFFHDCLPNGCDASILISSTPFNVAERNADVNLSLPGDAFDVVVRAKTALELSCPNTVSCADILTAATRDLLTMVGGPYYTVFLGRKDAKVSKASAIEGSLPRPTMSVSEIIRIFASRGFSVQEMVALSGAHSIGFSHCKEFASEIFNYSKSPPYDSHYNPRFALGLQRACADYQKNPTLSVFNDIMTPNKFDNMYFKNLQKGLGLLKSDGGLYSDPRTRPWVEKYAADESVFFGAFSQAMVKLGGYGVKVGNEGEIRRRCDAFN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35195624 35196589 - CcPI632755_09g020800.1 Cco09g2080 188537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2080 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Cco09g2080 321 FunFam Peroxidase 23 167 - -
Cco09g2080 321 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Haem peroxidase superfamily signature 51 65 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 FunFam Peroxidase 158 300 - -
Cco09g2080 321 SUPERFAMILY Heme-dependent peroxidases 20 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PANTHER - 4 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 Gene3D - 23 321 - -
Cco09g2080 321 Gene3D Peroxidase, domain 2 158 300 - -
Cco09g2080 321 ProSitePatterns Peroxidases active site signature. 51 62 IPR019794 GO:0004601(InterPro)
Cco09g2080 321 ProSiteProfiles Plant heme peroxidase family profile. 19 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Plant peroxidase signature 29 48 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 PRINTS Plant peroxidase signature 53 73 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 Pfam Peroxidase 37 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco09g2080 321 CDD secretory_peroxidase 23 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2080 Cco-Chr9:35195624 Cco11g0730 Cco-Chr11:8065039 3.80E-74 dispersed
Cco01g1437 Cco-Chr1:26147403 Cco09g2080 Cco-Chr9:35195624 1.10E-108 wgd
Cco10g1444 Cco-Chr10:27562999 Cco09g2080 Cco-Chr9:35195624 9.70E-134 wgd
Cco06g1876 Cco-Chr6:28979069 Cco09g2080 Cco-Chr9:35195624 1.20E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2080 K00430 - csv:105435603 552.747