Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2087 ATGAAAGGGAAGGAAGGCTTCAGGAAGATGGCGGTAAGTGGAAGAAGTTTGATGGAAGGAGTTCTCCCATTTCCGGCGATGATAGCGATGGAGTGTATCAACGTCGGTCTCAACACTCTTTTCAAAGCCGCCACCGCCGCCGGCATGAGCCACCACGTGTTCGTCGTCTATTCTTACTCTTTCGCCGCCCTTCTCCTCCTCCCTTCTCCCTTCATCTCTCGCAGATCCACTCGTCTTCCACCTCTCACTTTCTCTCTACTTTCGAAGATCGCTCTTCTCGGATTCATCGGTTCTTCTTCGCAGATTATGGGATACACGGGAATCAATTACAGCTCTCCAACGCTTGCTTCCGCCATCAGCAACCTTGTTCCTGCTTTCACTTTCATTCTTGCCATCATCTTCAGGATGGAGAAAGTGGTATTGAAAAGCAATAGCAGTCAAGCCAAAGTGATGGGCACAATAATATCAATAATAGGTGCATTTGTGGTCACATTTTACAAAGGTCCAAGGATCATGTTCTCTTCAGAGCCCATTTCTCTTTCACTTCATCACCATCCACAACTATCTTCTTCAGATTCTGATTGGGTCATTGGCAGCCTTCTCTTGACTGCTGAATATATCTTGGTTCCACTTTGGTACATTGTTCAGACAAAAATAATGAAGGAATACCCAGAAGAGGCAACAGTGATCTTCTTCTACAACTTAACTGTGGCCATCATAGCTGCAGTTGTAGGTGTGATTTTTGAGACAGATCCAAGTGCTTGGATTTTGAGGCAAAATACAGCATTGGCCTCTGTTTTATGCTCTGGACTATTTGGATCGTGTTTAAATAATACAGTTCATACATGGGCACTCCGCTTGAAAGGGCCAGTGTTCGTAGCAATGTTTAAGCCGTTATCCATCGTTGTCGCTATCGTAATGGGAGTTCTGTTTCTTGGTGATTCTCTATATCTTGGAAGTCTCATTGGAGCATCCATAATATCCATAGGGTTTTACACTGTAATGTGGGGAAAATCAAAAGAAGAAATGGGTGTTGGAGAAGAAAAAGAAGAAGGCCATAGCCAAAATCTTGATGGTAACAAGGAATCAAATGAAGATCAGAGAGTACCTCTTCTTGGAAGCTACAACACACAGAGATGCAGTGCAGACCATCTATGGAAAGGATTGATTGATACAACTTTTATTTGCCTTCAAGCTCTGGCTAACGGCTATGGCCAAGCATGGGAGGAAATTGTAAAATTTGTTTGTGGTCAGAGCATGGATTCCAAGTTCAACGCTAGGTTGGGTCGGTGGTTTAAGCGGGCCGGCCGATGCCCCTTCTCTCTCCCGCTGTCTTCCTCGTTTCGATCCACTCGGAGGACACCTAGTCAGGAACCCATGCCTTTGTCCTTATCGTCAATTGGCAGCCTTCCCAGTGACAACAACGTTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTTCTCCAATTCCAGTCCCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAATCGGTGAGGAATATCGCCTTGGTTCGTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCTAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTTTCCGGGTATGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGAGAGCTGTTCTCTTTTGTTCTTGGTAACACTGTCGAGGCTTGA 1719 45.55 MKGKEGFRKMAVSGRSLMEGVLPFPAMIAMECINVGLNTLFKAATAAGMSHHVFVVYSYSFAALLLLPSPFISRRSTRLPPLTFSLLSKIALLGFIGSSSQIMGYTGINYSSPTLASAISNLVPAFTFILAIIFRMEKVVLKSNSSQAKVMGTIISIIGAFVVTFYKGPRIMFSSEPISLSLHHHPQLSSSDSDWVIGSLLLTAEYILVPLWYIVQTKIMKEYPEEATVIFFYNLTVAIIAAVVGVIFETDPSAWILRQNTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSLIGASIISIGFYTVMWGKSKEEMGVGEEKEEGHSQNLDGNKESNEDQRVPLLGSYNTQRCSADHLWKGLIDTTFICLQALANGYGQAWEEIVKFVCGQSMDSKFNARLGRWFKRAGRCPFSLPLSSSFRSTRRTPSQEPMPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA 572
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 35264875 35272567 - CcPI632755_09g020870.1 Cco09g2087 188544
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2087 572 Pfam EamA-like transporter family 35 164 IPR000620 GO:0016020(InterPro)
Cco09g2087 572 Pfam EamA-like transporter family 211 335 IPR000620 GO:0016020(InterPro)
Cco09g2087 572 MobiDBLite consensus disorder prediction 345 365 - -
Cco09g2087 572 MobiDBLite consensus disorder prediction 345 366 - -
Cco09g2087 572 SUPERFAMILY Multidrug resistance efflux transporter EmrE 60 167 - -
Cco09g2087 572 Gene3D Cyclic phosphodiesterase 447 567 - -
Cco09g2087 572 SUPERFAMILY Multidrug resistance efflux transporter EmrE 237 340 - -
Cco09g2087 572 Pfam 2'-5' RNA ligase superfamily 456 552 - -
Cco09g2087 572 PANTHER WAT1-RELATED PROTEIN 26 352 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2087 Cco-Chr9:35264875 Cco10g1432 Cco-Chr10:27411138 1.40E-79 dispersed
Cco09g2087 Cco-Chr9:35264875 Cco09g2088 Cco-Chr9:35281341 7.80E-70 tandem
Cco10g1431 Cco-Chr10:27395446 Cco09g2087 Cco-Chr9:35264875 1.40E-72 wgd
Cco05g2779 Cco-Chr5:35582102 Cco09g2087 Cco-Chr9:35264875 3.30E-53 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2087 - - - 0.0