Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2096 ATGATGTCGGACGGTTTGATCTTTAACCGATCTCCAGGTCACGCCAACATGTTGTTTTTCGGAAGTGGTGATTCCATTCTTCGAGGACCAAGTTTCACGATGGGGATGGAGGAAACTTCAAAGAGGCGACCCTTTTTCAGCTCTCCGGATGACCTGTTTGACGATGACTACTACGATGATCAGCCACCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGTCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTAGATGGAAGACAAAGCAGCTCGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTCGTTCTAGCTACGACTTTATTGCTAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCAAGCTAAGAATCCCGAGCCATTTCTGGAGGATCAACTCCTTGTTCCTGTTGTGCAACATGGCATTAAGATTGAAGACCACCATAGTTGCAGGAGCAACGGAAGCGCTGTGCTGGACGAGGACGGTCCCCAACTCTTAGACAGTGGGGATTCGTACCTCTTGAGCAATGACTATGATGGTTGTGTTTTGCCAGTTTTTGGAGTAAACTCGGAGGAGGAAGATGGGAGTGACGACGGTCAGGGTTACTTCTCGGATGTTTATACAACAGCCGATCAGCAGACTCACGAGGGAGAGCCTTTGACCTGGTGGGACTGGACGTCGTAA 837 48.27 MMSDGLIFNRSPGHANMLFFGSGDSILRGPSFTMGMEETSKRRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFIAKENERLKAEVASLTEKLQAKEVVESSFQAKNPEPFLEDQLLVPVVQHGIKIEDHHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDGCVLPVFGVNSEEEDGSDDGQGYFSDVYTTADQQTHEGEPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35347919 35349958 - CcPI632755_09g020960.1 Cco09g2096 188553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2096 278 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
Cco09g2096 278 Coils Coil 140 167 - -
Cco09g2096 278 Gene3D - 58 126 - -
Cco09g2096 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco09g2096 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677(InterPro)
Cco09g2096 278 SMART HOX_1 63 124 IPR001356 GO:0003677(InterPro)
Cco09g2096 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677(InterPro)
Cco09g2096 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677(InterPro)
Cco09g2096 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677(InterPro)
Cco09g2096 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 38 198 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cco09g2096 278 SUPERFAMILY Homeodomain-like 48 122 IPR009057 -
Cco09g2096 278 CDD homeodomain 65 121 IPR001356 GO:0003677(InterPro)
Cco09g2096 278 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2096 Cco-Chr9:35347919 Cco10g0805 Cco-Chr10:16279963 5.90E-23 dispersed
Cco10g1420 Cco-Chr10:27286663 Cco09g2096 Cco-Chr9:35347919 2.50E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60003 PF00046 Homeodomain 3.40E-17 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2096 K09338 - csv:101210106 505.753