Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2105 ATGGATCATTCACTCGAGACGTCGAGGCACAAGTGTGCAGCTTGTTTCAGACAATTCAACAAGATAGAGCATTTGGTAGATCATATGAGGACTTCTTTTCACTCACATCATGAACCCACTTGTGCCATTTGCAAGAAACATTGTCGATCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCACTGCCAAAACAAGAATGCAAAAACATATTTGCTACACGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCTTACTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCGGCTGTAAATTCTGGACTTCTTGCTCGTTTCGCCAACTTGGGAATTCGTGACGGTTCGACTGTCATAGATAGCGGAAGAACTCGAGGCTCGGGCGCCGTGGCGTTAGCTTGCAAATATGTAGGTGGGGGCAGCGATGGGTCGCTGGATATATGCGCCAAGGTTTGCCTTATTGATGAGAGCGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCTGTCACAAATTATAGGTATGAAACGGTGGGAATTCGTCCAGAACACATTCGAGATGCAATGCCAGTGAAGCAAGTTCAAAAGAAAATTCAAGATATCCTCTACAATGGAGGTGAGAAGGCTAGGATTCTTGTGGGTCACTGTGTCGAAGATGATCTCAAACGTCTACAAATCGGATACCCATCCGTCATGATAAGGGACACAGCAAATTATCCGCCATTGATGAAGACGAGCAAGCTTTGCAATTCACTCAAATATCTAGCTCAAGTGTATCTAGGATTTGAGCTACAAAATGGGATACAAGATCCTTATGAAGAATGTATTGTGGCCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAACATCCAATGGCTTCTGACCCACAAAACAAAAATAACTTTGCTAATTGGAGGGAAAATGAGCTTCAAAGGATGAGTCCAGAACAAATGTTGGAGATTTCTAGGTCTGACTATTATTGTTGGTGCATGGACTCGAGGATTTGA 1035 42.8 MDHSLETSRHKCAACFRQFNKIEHLVDHMRTSFHSHHEPTCAICKKHCRSLDSLREHLIGPLPKQECKNIFATRGCKFCLAILDSSYSQRLHQERCQFSAVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGSDGSLDICAKVCLIDESENVIFYSYVKPIIPVTNYRYETVGIRPEHIRDAMPVKQVQKKIQDILYNGGEKARILVGHCVEDDLKRLQIGYPSVMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFELQNGIQDPYEECIVAMRLYKRMRSQVHRIEKHPMASDPQNKNNFANWRENELQRMSPEQMLEISRSDYYCWCMDSRI 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35423214 35427064 - CcPI632755_09g021050.1 Cco09g2105 188562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2105 344 SMART exoiiiendus 130 295 IPR013520 -
Cco09g2105 344 SUPERFAMILY Ribonuclease H-like 145 292 IPR012337 -
Cco09g2105 344 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Cco09g2105 344 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 342 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
Cco09g2105 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
Cco09g2105 344 CDD REX4_like 132 287 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Cco09g2105 344 Gene3D - 128 309 IPR036397 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0453 Cco-Chr4:14354664 Cco09g2105 Cco-Chr9:35423214 1.50E-79 dispersed
Cco09g2104 Cco-Chr9:35400630 Cco09g2105 Cco-Chr9:35423214 9.90E-69 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2105 - - - 0.0