Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g2111 | ATGGAGAATCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGTGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATATATGTCTGGTGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCCACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTTATGACATTACAAAATGCTCCCCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCTAAGTCATTCAAAGAAATGGTCGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTGCTAAAGCACCCTTTTTTTAAACATGCTCGTTCGGTTGATTATCTTGCTCGAACAATCCTGGATGGCCTTGATCCGTTAGGGGAACGTTTTAAGAAGCTAAAGGCCAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAATCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATGTGTCAAACATAGAAGATCTAGATGTACATACTACACAGCAAAGAAACAAGAACAATGAGTTTACCTTTCCAGTAGAGGGTTCATCCCTTGAAAGACTGAATCACCCTACTGCTGCAGCTAGTCAAGAGGATGGTTTTAACGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTTCCTATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGATATCTATGAAGATATAAGCACGGACAGTGTAAGGCCGATGGATAGAGAAAATGGAAGAACGGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCGGAGAACAAGAGGTCTTTCAGTGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGACTATTGCAGATGGTGATAGGGACTATTTGCAGTCAAAACCTCCATCTGAGCGTAATTATAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAGGATGCATCAGATGGAACAGTTGTTCAACGCAAGGGGCGGTTCAAAGTTACTTCAGCGGAGCTTAGTCCGAAGGGTCCTATGACGGGCTCATTTAGCCCTGTCTGTGGAGGGACGATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAATGCATTTTGCAGCAGAACATCCTTCAACGGGAAGAAATTGTTAAATTGATCAAGTGTTTGGAACAAATGACTGGCAAGAATCCAGATGTTTCAGAGGCGGTTACCAGTGACCTTCTGCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTTGTTGAGGAATTAGAGAAGCAAAAGTTGAAAAATGCGGAGTTTGAAAAACACATGATTTCTATGGCAAATAAAGAGAAAACATAA | 2016 | 41.96 | MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDVSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLNHPTAAASQEDGFNDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSVRPMDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKTIADGDRDYLQSKPPSERNYSGPLLYRQKRDTNNVSSVEDASDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKCLEQMTGKNPDVSEAVTSDLLQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNAEFEKHMISMANKEKT | 671 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 35503847 | 35512840 | + | CcPI632755_09g021110.1 | Cco09g2111 | 188568 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g2111 | 671 | Gene3D | Transferase(Phosphotransferase) domain 1 | 97 | 311 | - | - | |
Cco09g2111 | 671 | SMART | serkin_6 | 16 | 277 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g2111 | 671 | ProSiteProfiles | Protein kinase domain profile. | 16 | 277 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g2111 | 671 | MobiDBLite | consensus disorder prediction | 481 | 507 | - | - | |
Cco09g2111 | 671 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 278 | IPR011009 | - | |
Cco09g2111 | 671 | FunFam | Serine/threonine-protein kinase BLUS1 | 5 | 93 | - | - | |
Cco09g2111 | 671 | MobiDBLite | consensus disorder prediction | 449 | 464 | - | - | |
Cco09g2111 | 671 | CDD | STKc_OSR1_SPAK | 14 | 277 | - | - | |
Cco09g2111 | 671 | Pfam | Protein kinase domain | 16 | 277 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco09g2111 | 671 | Gene3D | Phosphorylase Kinase; domain 1 | 5 | 92 | - | - | |
Cco09g2111 | 671 | MobiDBLite | consensus disorder prediction | 436 | 464 | - | - | |
Cco09g2111 | 671 | Coils | Coil | 627 | 661 | - | - | |
Cco09g2111 | 671 | PANTHER | SERINE/THREONINE-PROTEIN KINASE FRAY2 | 6 | 657 | IPR047173 | GO:0043539(InterPro) | |
Cco09g2111 | 671 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 45 | IPR017441 | GO:0005524(InterPro) | |
Cco09g2111 | 671 | FunFam | serine/threonine-protein kinase BLUS1 isoform X1 | 97 | 330 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0697 | Cco-Chr6:7793893 | Cco09g2111 | Cco-Chr9:35503847 | 1.40E-33 | dispersed | |
Cco07g0773 | Cco-Chr7:16443287 | Cco09g2111 | Cco-Chr9:35503847 | 9.30E-54 | dispersed | |
Cco09g2111 | Cco-Chr9:35503847 | Cco10g1271 | Cco-Chr10:25464009 | 7.10E-163 | dispersed | |
Cco09g2111 | Cco-Chr9:35503847 | Cco05g0526 | Cco-Chr5:4222715 | 3.50E-93 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87118 | PF00069 | Pkinase | 2.80E-60 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g2111 | K08835 | - | csv:101205102 | 1323.15 |