Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2120 ATGCAGAATAACGCTGTATTGGCTTTGGCTATGTCTTTTTCCCCTAATTCTATTGCTACGGCTACTGCTGTTCCATGCCCAAGCCGAAGCCCTAATTTCCCTCACTTTTCCCACATTCTTCAATTTCGTTCTCCATGTTCCATCTCATGGCGTTCTTCTTCATCCATCTCTCTTTTTTCTTCTCGATTTACTCCGAGGTTTCAGAAATTTGCCGTAATGGCTGCTTCTGTGCCGGAGAGTGCCGGCGAGGCTGTGGAATCCGCTGATTTCGTTCACAATCTCCGGCTTGGTGCAATGTTTGGGGTTTGGTACCTTTTGAATATCTACTACAATATTTTCAATAAACAGGTTCTGAAAGCCTTTCCCTTTCCAACTACGGTCACAGCTTTCCAGTTCGGCTGTGGTACGCTCATAGTAAACTTAATGTGGGCTCTTAATTTTCACCATAGACCCAAGATCAATCGATCCCAGTTTGCTGCCATTCTTCCACTGGCTGTAGCGCACACACTGGGAAACATATTAACCAATGTGAGTCTTGGGAGAGTTGCGGTTTCATTCACTCACACCATCAAAGCAATGGAGCCATTTTTCACTGTCCTTCTCTCTGCTTTGTTTTTGGCTGAGAGGCCCACATTTTGGGTTGTTTTTTCTCTGGTACCCGTTGTAGGAGGAGTGGCACTTGCTTCTTTCACTGAAGCCTCATTTAATTGGATTGGCTTCAGCAGTGCCATGGCTTCAAATCTTACCAATCAATCACGTAATATCTTCAGCAAAAAGTTCATGGTCCACAAAAAGGCATTGGACAATATCAATCTCTTCTCTGTACTTACTATCATTTCGTTTATCCTGTTGGTTCCCTCGGCCCTTCTCCTTGAAGGCAGTAAACTTAGTCCTTCATACCTGCAATTAGCGGCAAATCAAGGGTTGAATATTAGGGAGCTATGCATTAGGTTGCTTCTATCTGGCATCTGTTTCCATAGTTATCAGCAGGTTTCTTATTCAATACTACAGGAAATTTCACCAGTGACCCATGCAGTAGGAAATTCTTTGAAGCGTGTGGTGGTTATAATGTCCTCCGTTATCTTCTTCCAAACAGCAGTTTCACCTCTAAACGCCCTAGGAACTGGCATAGCTCTTGTGGGAGTTTTCTTGTATTCAAGGGCAAAGCGTATGAAGCCAAAGCTTAAGTCTTTGTAA 1197 43.61 MQNNAVLALAMSFSPNSIATATAVPCPSRSPNFPHFSHILQFRSPCSISWRSSSSISLFSSRFTPRFQKFAVMAASVPESAGEAVESADFVHNLRLGAMFGVWYLLNIYYNIFNKQVLKAFPFPTTVTAFQFGCGTLIVNLMWALNFHHRPKINRSQFAAILPLAVAHTLGNILTNVSLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPTFWVVFSLVPVVGGVALASFTEASFNWIGFSSAMASNLTNQSRNIFSKKFMVHKKALDNINLFSVLTIISFILLVPSALLLEGSKLSPSYLQLAANQGLNIRELCIRLLLSGICFHSYQQVSYSILQEISPVTHAVGNSLKRVVVIMSSVIFFQTAVSPLNALGTGIALVGVFLYSRAKRMKPKLKSL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35597766 35605376 - CcPI632755_09g021200.1 Cco09g2120 188577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2120 398 PANTHER SOLUTE CARRIER FAMILY 35 94 389 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cco09g2120 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 142 231 - -
Cco09g2120 398 Pfam Triose-phosphate Transporter family 94 386 IPR004853 -
Cco09g2120 398 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 94 395 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cco09g2120 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 311 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2120 Cco-Chr9:35597766 Cco10g0522 Cco-Chr10:6216407 3.30E-59 dispersed
Cco01g1463 Cco-Chr1:26450301 Cco09g2120 Cco-Chr9:35597766 3.10E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2120 K15283 - csv:101217436 675.626