Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g2134 | ATGGCTTCTTCAAGCTTCTCAAACTCACCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCCGATTGCATATTTGCGCCCTACTTTCCTCCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTTCTCAACGAGGTCCAGCCCCATCAGCGCGAGGACGCCGTAAATTCTCTAGCCTACGAGGCCGAGGCTCGTATGAAAGACCCTGTCTACGGTTGTGTCGGGGCCATCTCCGTTCTACAAAGACAAGTCATTCGCCTGCAAAAAGAGCTCGATGCTACAAATGCTGATTTAGTACGATATGCAAGCGGGGGCGCTCGCCCGCCCTCGCAATTTGGAAGAAGGGCAGCAACTGCCTCGATGACTCGCCATCATTCTGACCTGTCTTTTCTTTCTCCCTTGAGTAGTAATGATCATGATGATCCTTATTGCCATGATAAAGAGGAAGACAATTGA | 492 | 48.58 | MASSSFSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYASGGARPPSQFGRRAATASMTRHHSDLSFLSPLSSNDHDDPYCHDKEEDN | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 35716222 | 35716713 | - | CcPI632755_09g021340.1 | Cco09g2134 | 188591 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g2134 | 163 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 118 | - | - | |
| Cco09g2134 | 163 | MobiDBLite | consensus disorder prediction | 134 | 148 | - | - | |
| Cco09g2134 | 163 | Coils | Coil | 89 | 109 | - | - | |
| Cco09g2134 | 163 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
| Cco09g2134 | 163 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - | |
| Cco09g2134 | 163 | MobiDBLite | consensus disorder prediction | 121 | 163 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco09g2134 | Cco-Chr9:35716222 | Cco11g1139 | Cco-Chr11:22185943 | 4.70E-44 | dispersed | |
| Cco02g1441 | Cco-Chr2:26802056 | Cco09g2134 | Cco-Chr9:35716222 | 5.20E-39 | transposed | |
| Cco08g1882 | Cco-Chr8:29865971 | Cco09g2134 | Cco-Chr9:35716222 | 4.30E-17 | transposed | |
| Cco01g1487 | Cco-Chr1:26631782 | Cco09g2134 | Cco-Chr9:35716222 | 4.80E-45 | wgd | |
| Cco10g1378 | Cco-Chr10:26834204 | Cco09g2134 | Cco-Chr9:35716222 | 5.20E-58 | wgd | |
| Cco06g1928 | Cco-Chr6:29543816 | Cco09g2134 | Cco-Chr9:35716222 | 1.40E-52 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60006 | PF03195 | LOB | 9.30E-42 | No_clan | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g2134 | - | - | - | 0.0 |