Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2141 ATGGGGTCCGGTAATGGGTTATGTTCAAAAGAGTTTGATTTGGATGCTAAGTGGCTGGTCGATCCGGAGCAAATCTTTGTTGGGCCAAGGATTGGGGAGGGCGCGCATGGCAAAGTGCACAAGGGGAAATATAAAGACCAAAATGTTGCAATTAAAATAATTCGGAAAGGTGAAACCCCAGAAGATATTGCGAAAACTGAGGCACGCTTTGCTCGGGAGGTTGCTATGTTATCCAAAGTTCAACACAAGAATCTTGCGAAGTTTATAGGTGCTTGCAAGGAGCCTATTATGGTGATAGTGACAGAGCTTCTTTTAGGCGGTACATTAAGGAAGTACCTGTTGAGTATAAGGCCAAGGTGCTTGGACTTCAATGAGGCAGTTGGCTTTGCACTTGATATTGCACGTGCAATGGAATGCTTGCATTCGCATGGCATCATTCACCGTGACCTCAAGCCTGAGAATTTGATCTTGACTGCAGACCACAAAACAGTTAAACTTGCTGATTTTGGTCTTGCTAGAGAAGAGTCGGTAACAGAGATGATGACGGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGCTATACAGTACAGTAACTTTACGAAATGGAGAGAAGAAGCATTACAATCACAAGGTGGATGTTTACAGCTTTGGAATTGTATTCTGGGAGATTATCCAAAATAAGTTGCCTTTCGAAGGCATGTCAAATCTACAAGCAGCATATGCAGCTGCTTTTAAGAATTTACGACCGACTGCTGAGAACCTCCCACCGGATTTAGCACCGATTGTGACTTCCTGTTGGACAGAGGACCCAAACGATCGGCCTAACTTCAACCAAATCATACAAATGCTCTTGAAATGTCTATCCACCATTCCACAACCAGAGTATGTTGCACCACCACCATTGATGCACCCACCTGAGAATGCAGTTTTGCCACCAGAGTCTCCTGGAACAAGTTCTTTGATGGCAGCCACAAGACGTGGCACGAGGGAAGTCCTGAACAGCGAGATGGAAGAGAAACCGAGTAGTTTCTTCTCGTGTCTCACTGACATTACATTTAACTCGTTTTCCGAACCTCCGTATCCTTCCACCGGACACCCCAGCTTCGTCTTCCATACCTCGGCCTCGTTCCTAGCTTCCGTCAACGCTGGGGCCCATATCCATCAACAACCCCCTCCATGCTTCCCACTTCCTCTGTTCCCGAGCCTATGCTCAGCTCTTGAAGAATATGGCAAGAATGATGAGATTGAGAATGTGTGGAGTTCACTTCGTTGTGTGGACTGTGCACATTTATCTCCAACAAAAGTGGTTGGAACTGTAACTGTAAATCCATCCAATGTTCTGTCTAAAATGATGTTTATCATGTCTTGGATAATTGATAGCCGAACAATTGCAAGAAAAGTCAGGAACATCAGTCAATCTTCTTCACAAGTAATTAAAGATTGTGATGCGAAACGAGAATGTCCAAACTGTCACTTTATTATTGATAATACAGATGTTTCTCCTGAATGGCCTGGATTGCCTGCAGGAGTAAAGTTTGATCCAACTGATGAAGAAATAATGGAGCACTTAGCAGCCAAGTGCACTGTCGGAAACTTAAAGCCACATGCATTAATTGATGAATTCATTCCCACACTTGAAACAGACCAAGGAATCTGTTACACGCATCCAGAAAATCTCCCCGGTGTTAGTAAAGATGGAAATGATGTCCATTTCTTCCATAAAACAAGCAATGCATATTCCACGGGTCAAAGGAAGCGTCGCAAGATTGAAAGTGAACATAATTCAAGCCTCGAACATTTTCGCTGGCACAAGACAGGTAAGACCAAGGCTGTGATAGAAAATGGTGTTCACAAGGGATGGAAGAAGATCTTCTCTCTGTATAGAAGTTCGAAGGGAGGCTCGAAGCCCCAAAAGTCTAATTGGGTGATACATCAATATCATTTGGGAACTGAAGAAGATGAGAAGGAAGGTGAATACGTTTTATCAAAGATTTCTTATCAGCAGCCAAAGCAATGTATTAAGAGTAGTGATAATATGCTCATTGAGGATTTTGATGCTATGCTGCATCAAACAAGTCCAAGAACTCCCAAGTCCAATCCTCCGATTCCACCTCGATCAGGAAAATCACTTGTCTCCAATGCTGTTGCTGACAACAGTCTGCCTCAGTCATTTGCAAAGGAAGAAGAGTCAACTCCGGAGGCATCTCGTGTTTCTTATCCAAATATTTCATCAGAGAACGACACAGGATACCATGATTGGTTGGCCGGAGAATCTCAGGATATAGATGATGTTGGATTACATTACTTGGAAGACAACTTATTGTGCAATGAAGTCCTAGATTCTAATGCTTTTATAAGTAACAACCAATTAAATCAAATGCCTTTCGCTCTCTCTGGTAGCAACGCTTACCACGAGATTGCAAACGACAATGTTCCATGTGGAATTGCAGACCTTGTGAACCTTGAACTAGATACTCCACCTGATTTTCATCTGGCTACTCTTATTATTGCTTGCAGGACCTGCAGTTTGGTTCTCAAGAGAGCATTTTCGACTGGATCGATAGGATATGAACTGAATGTTGAAGCAAATTCTAATGAGAATGACATGTTACAATCTGACTTTTCTGCCCTCGAATCTTCCTTGAATTCACCATCTTTCATCGTAAAACTCTTTGCAATCATTTGGCTTTCATTTGTATGGGGAATGCCATGCATGTCGCCTGTTGGAAGTCGGTTAAACTTCAAAATTCGAATGACACGTAACAACTTACGAACATATCTATCAGTTGTTTCTCACGGTCAAGTCATCGAATCAAAAACAACCGCAACGGATCCAGTGATGAAGCTGGTTTTTGCTCAAATTTTCAATGTTGTATCGTTAACAGACTTTCATTCAGAGGTTGCTTCGTGCAATGTGGCCCGTAGAAGTATTCATGGTGAATATATACTGCCTTCCACATCTAAGGTTGTTGGTCCATCAAATGGGTTGTTCCGTTGTATGTCAACATCAAAGGGAAGAAGTATGCGAAGTAAGGTGGAGAGGAGAATGAGGAAGGAGTCTGGTAAAACCTTAAGGGAGATCCGAAGAGCTAAGAAAATAAAGAAAAAGTTGATGACAGAGGAAGAACGGCTCCTTTACAACCTCAAAAGAGCCAAGAAGAAAGTAGCATTACTTTTACAACAACTCAAGAAGTATGAGCTACCAGAGTTGCCTCCCCCTCGTCATGACCCTGAGCTCTTGACCCCTGAACAACTTCAAGCTTATAAAAAAATAGGCTTTAGAAACAAAAATTATGTCCCAGTTGGAGTTCGTGGAGTGTTTGGAGGAGTGGTCCAGAATATGCATCTACACTGGAAGTTTCATGAGACAGTACAAGTGTGTTGTGATAACTTCCCCAAAGAAAAAATCAAGGAAATGGCAACCATGCTTGCAAGACTTAGCGGTGGAATTGTAGTGAATATACATGACGTGAAAACAATCATCATGTTTCGTGGAAGAAACTATCGTCAACCTAAAAATTTGATACCGATCAACACACTTACTAAGAGAAAGGCATTATTCAAGGCCAGATTTGAACAAGCTCTCGACTCTCAGAAGCTAAACATAAAGAAGATAGAACAAGAGCTCAGGCGTAAGGGTATAAACCCGGAGGATCCAGTTGCTATGGCTAGCATACAGAGAGTAGCTTCAATGTTTTTTAACGCCATTGACAAAAAAGAAGGTACCCCATATGTCTTCTACGGTGATAAGCAGACAGTGACAGAGACCAAGACCAAGAGTAACATGGAGGAAGTGGAATCTAATAGTGACAGTGACCAGGAAGAGTTGGACCGATTCATAGCTGAGATCGAGGATGCAGCCGACCGAGATTGGGTTGCTGAGGAAGCGGCAGAGAAAGAAGAACTTAGCCAAATTAGGTACAGGAATAGAGAAGAACATGGTGGGAGATTCAGAAAGTCTGATATGCATATAAATAACAATTCTGACAACGAGATGGATAAGCCAAGAGTTTGGAGGGAGAGAGATGGTAAGCAAAGATTGCACGATAGTGAAGAGGAAGATGGTGATCATGAAAGTGAGGAGGAATGGGATTCTGATGATGGTCAGAATGCTAATAGTAGCTACACAGATGATTCTGATGGAGCACATGGGATTGTCAAGGCTACTCAAAGAGCTGGAGGGAGGCATGATTTGACCAAAAATAAAAGTTTTGACAGAAATGTCGAGCCCTTTGTAAGAAAAAGGATGGATAAAGAAGCTTCTGAGACTGAAAACATGCTTAGTGATCTTGAAAGTGCTATGTGGCAATCAGACGAGGAGGAAGAAGATGACATGAAAGTTTCAAGATCTGCAAGTCATGATTACAAGTGCGATGAAGATGATTTGCATCACATCAAGAAAGATCGGAACAATAGGCTCAATGACTATGACAGTAGCGTTGATGAACCCAATGAAGCTTACGATAGGTTTAAACACACATACACTAAACAAAAGCAGGATGGAATGAACAAATCCAAAAGTAGTTACAACTTTGTCTCGAAAGATACTGATTCAGGAAAAGCAATGTGGGATTCAGATGATGAAGACAAATCAGGGACATCAAGACCCCAGAGATACGAATACTGGAGTGGTAGTGAGGAAGATGATTCTCGTTGA 4662 42.21 MGSGNGLCSKEFDLDAKWLVDPEQIFVGPRIGEGAHGKVHKGKYKDQNVAIKIIRKGETPEDIAKTEARFAREVAMLSKVQHKNLAKFIGACKEPIMVIVTELLLGGTLRKYLLSIRPRCLDFNEAVGFALDIARAMECLHSHGIIHRDLKPENLILTADHKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIIQNKLPFEGMSNLQAAYAAAFKNLRPTAENLPPDLAPIVTSCWTEDPNDRPNFNQIIQMLLKCLSTIPQPEYVAPPPLMHPPENAVLPPESPGTSSLMAATRRGTREVLNSEMEEKPSSFFSCLTDITFNSFSEPPYPSTGHPSFVFHTSASFLASVNAGAHIHQQPPPCFPLPLFPSLCSALEEYGKNDEIENVWSSLRCVDCAHLSPTKVVGTVTVNPSNVLSKMMFIMSWIIDSRTIARKVRNISQSSSQVIKDCDAKRECPNCHFIIDNTDVSPEWPGLPAGVKFDPTDEEIMEHLAAKCTVGNLKPHALIDEFIPTLETDQGICYTHPENLPGVSKDGNDVHFFHKTSNAYSTGQRKRRKIESEHNSSLEHFRWHKTGKTKAVIENGVHKGWKKIFSLYRSSKGGSKPQKSNWVIHQYHLGTEEDEKEGEYVLSKISYQQPKQCIKSSDNMLIEDFDAMLHQTSPRTPKSNPPIPPRSGKSLVSNAVADNSLPQSFAKEEESTPEASRVSYPNISSENDTGYHDWLAGESQDIDDVGLHYLEDNLLCNEVLDSNAFISNNQLNQMPFALSGSNAYHEIANDNVPCGIADLVNLELDTPPDFHLATLIIACRTCSLVLKRAFSTGSIGYELNVEANSNENDMLQSDFSALESSLNSPSFIVKLFAIIWLSFVWGMPCMSPVGSRLNFKIRMTRNNLRTYLSVVSHGQVIESKTTATDPVMKLVFAQIFNVVSLTDFHSEVASCNVARRSIHGEYILPSTSKVVGPSNGLFRCMSTSKGRSMRSKVERRMRKESGKTLREIRRAKKIKKKLMTEEERLLYNLKRAKKKVALLLQQLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARFEQALDSQKLNIKKIEQELRRKGINPEDPVAMASIQRVASMFFNAIDKKEGTPYVFYGDKQTVTETKTKSNMEEVESNSDSDQEELDRFIAEIEDAADRDWVAEEAAEKEELSQIRYRNREEHGGRFRKSDMHINNNSDNEMDKPRVWRERDGKQRLHDSEEEDGDHESEEEWDSDDGQNANSSYTDDSDGAHGIVKATQRAGGRHDLTKNKSFDRNVEPFVRKRMDKEASETENMLSDLESAMWQSDEEEEDDMKVSRSASHDYKCDEDDLHHIKKDRNNRLNDYDSSVDEPNEAYDRFKHTYTKQKQDGMNKSKSSYNFVSKDTDSGKAMWDSDDEDKSGTSRPQRYEYWSGSEEDDSR 1553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35784739 35802733 + CcPI632755_09g021410.1 Cco09g2141 188598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2141 1553 Coils Coil 1264 1284 - -
Cco09g2141 1553 SUPERFAMILY YhbY-like 1081 1175 IPR035920 -
Cco09g2141 1553 MobiDBLite consensus disorder prediction 1315 1355 - -
Cco09g2141 1553 Gene3D Transferase(Phosphotransferase) domain 1 106 296 - -
Cco09g2141 1553 ProSitePatterns Protein kinases ATP-binding region signature. 31 56 IPR017441 GO:0005524(InterPro)
Cco09g2141 1553 MobiDBLite consensus disorder prediction 1395 1427 - -
Cco09g2141 1553 PRINTS Tyrosine kinase catalytic domain signature 256 278 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2141 1553 PRINTS Tyrosine kinase catalytic domain signature 101 114 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2141 1553 PRINTS Tyrosine kinase catalytic domain signature 213 235 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2141 1553 PRINTS Tyrosine kinase catalytic domain signature 139 157 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2141 1553 ProSiteProfiles CRM domain profile. 1080 1177 IPR001890 GO:0003723(InterPro)
Cco09g2141 1553 ProSiteProfiles Protein kinase domain profile. 25 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2141 1553 SMART CRS1_YhbY_2 1082 1166 IPR001890 GO:0003723(InterPro)
Cco09g2141 1553 MobiDBLite consensus disorder prediction 1502 1517 - -
Cco09g2141 1553 Pfam Protein tyrosine and serine/threonine kinase 30 285 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2141 1553 CDD STKc_MAP3K-like 31 285 - -
Cco09g2141 1553 MobiDBLite consensus disorder prediction 1521 1553 - -
Cco09g2141 1553 MobiDBLite consensus disorder prediction 1444 1501 - -
Cco09g2141 1553 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 958 1373 IPR040286 -
Cco09g2141 1553 Gene3D NAC domain 517 674 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco09g2141 1553 Coils Coil 1415 1435 - -
Cco09g2141 1553 Coils Coil 1190 1210 - -
Cco09g2141 1553 Pfam CRS1 / YhbY (CRM) domain 1082 1166 IPR001890 GO:0003723(InterPro)
Cco09g2141 1553 SUPERFAMILY NAC domain 494 669 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco09g2141 1553 Coils Coil 1036 1056 - -
Cco09g2141 1553 MobiDBLite consensus disorder prediction 1315 1553 - -
Cco09g2141 1553 FunFam Kinase suppressor of Ras 1 14 104 - -
Cco09g2141 1553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g2141 1553 ProSiteProfiles NAC domain profile. 508 669 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco09g2141 1553 MobiDBLite consensus disorder prediction 724 744 - -
Cco09g2141 1553 MobiDBLite consensus disorder prediction 692 712 - -
Cco09g2141 1553 SUPERFAMILY Protein kinase-like (PK-like) 17 318 IPR011009 -
Cco09g2141 1553 FunFam NAC domain-containing protein 8 517 673 - -
Cco09g2141 1553 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
Cco09g2141 1553 Gene3D - 1081 1177 IPR035920 -
Cco09g2141 1553 SMART serkin_6 25 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g2141 1553 Pfam No apical meristem (NAM) protein 509 650 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2141 Cco-Chr9:35784739 Cco10g2256 Cco-Chr10:35461495 1.20E-112 dispersed
Cco05g2570 Cco-Chr5:33965265 Cco09g2141 Cco-Chr9:35784739 4.10E-76 transposed
Cco09g1707 Cco-Chr9:28522403 Cco09g2141 Cco-Chr9:35784739 2.70E-33 transposed
Cco10g1548 Cco-Chr10:28678771 Cco09g2141 Cco-Chr9:35784739 2.30E-34 transposed
Cco10g1367 Cco-Chr10:26684207 Cco09g2141 Cco-Chr9:35784739 2.00E-148 wgd
Cco06g1942 Cco-Chr6:29656891 Cco09g2141 Cco-Chr9:35784739 5.20E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60007 PF07714 PK_Tyr_Ser-Thr 2.40E-57 CL0016 Cco TF
87119 PF07714 PK_Tyr_Ser-Thr 2.40E-57 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2141 - - - 0.0