Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g2150 | ATGGAAGTTATTGGTATAAGTTTGAACCCTATGATTATTATTGTATTAGCTTTGAGCTTTGCAATATTAATCATCTCCCACTCTCTTCTTAAACTCTTTGTAATTACTTCCACACCAAACCCTAATTTGCCTCCTGGCTGCATGGGCTTCCCCTTTGTTGGAGAAACTCTCAGCTTTCTCAAACCTCATCATTCTAACTCAATTGGAACCTTCCTTCAACACCATTGCTCCAGGTATGGGAAGGTTTTCAAATCTCATCTATTCGGTTGGCCGGCGATAGTGTCATGTGATCGAGAGCTTAACGTCTTCATTCTTCAGAACGACGATAAGCTTTTCAAAGTGAGTTATCCAAAAGCCATGCATGGCATTCTCGGAACAAATTCTTTGATTATCGCCGCCGGCCACACCCACCGGAAGCTCCGAAACGTGGTCGTTAGCTTCACCAGCTGGTGCAAATCCAGACCATCTTTCCTTCACTCCCTCCATAATCTCTCTATCTCTTTAATGGACACTTGGAGATCCCAAACTCAACTCCTTTTCTGCAAAGAACTCAAAATGTTTGCTTTAAGCGTTATGGTGAAGGAGCTATTGGGCATCAAAGCAAACGAGTCCATAGGATCAAAGATATTGGAAGAGTTCGAAACGTATATGAAAGGCTTTGTTTCTTTACCTTTAAATTTGCCAGGAACTCCCTATTCTAAAGCTGTTAAGGCTAGGGGGAGACTTTCTTACATTGTGAAAGAGATGATGAGAGAGAGGAGAAGGAGGGGATTATTGGAAGGGAATGATGAGGATTTTCTACAAGTGATAATGTCAAATTGGAAGCTTAGTGATGAAGAAATTGTGAGTGTTGTTTTGGACATATTGCTTGGAGGTTATGAGACAACAGCTACCCTCATGGGATTGATTGTCTATTTTCTTGCACATTCACCTCCTAATGTTCTTGCAAAATTAAAGGACGAACATGAAGCAATAAGAATTGGAAAAAGGAATGGAGAATATCTCAATTTGGAAGATTATAAGCAAATGGATTTCACATGCAATGTGATATTCGAAGCCATGAGATGTGGGAATGTGGTGAAGTTTTTACATAGAGAAGCTCTTGCAGATGTCAAATTCAAAGATATTGTCATACCCTCTGGATGGAAAGTTCATCCAGTTTTCTCAGCAATTCATCTTGATCCAACCCTCCATCCAAATCCTCAACAATTTAATCCTTGGAGATGGACTGTATATCTCACGGCCATCGCCTTCTGGAATTTGAGATCGTTGGTCGGAGCTCGACATCAGCCGCCACTAGTAGTCGATCGCCGCATCATCGTCGCATGCACCACGCCCGACTCCGTCTTTTGCCTAGACGCACGTGGCGCCGCCCCCAGTTTCATCCCCATCCCTTATTGTCCTCTTCTTCTCCGGCGAGTATCTCCGGCGACCGGTGGTAGTGTGTGCGCTGAATCCAGCCAGCGACCTGCACCGTTTACCCGCACGGACAGTGACCCTCCCGGCGGCGAATTAGATCGCTTTTTTTGCGGCTTACATCAGCAGCGGCATCTGGACGGCGGTGAATCACACGTTTACTCCTCCACAGTCGGTGAACGTAACCATCAGCGACCATTGCGCCCCGCCGAACGCCTCCTCTCGACTAAGATGTCCAAGGAGGAGAGCTTTGAAGTTAATTTAACAACCGACTGCAGCCCAGAATCTAGTAAGAAAAGAGCAAAAAGAAGAAAAAACAAAAAGAAGCAGTTATTGATGGAAGGTGTAGATGTCATGGAAATGAAAGAGGTAGGATCCGTTCAGCTGGGGGAAAGCAACATAAACTCCGATAGTGACAAAGTGAAAAAGAAGAAAAAGAGAAAGAAGAGTACTCAACAATATGTAGAGGAGAGCTCTATCAAGGATGAGGCAGGAGAATATGAAAATAGAGCAGAGACTTTTATGAAAGAGGGCAGTCCTTTCTCTAATGGTGGAAGTGAGAAAATTTTCGAAAAGAGGAAAATTGCATTGGAAGATGCTGAGAATGAAAGGACTGACAGCATGGTCAGAGAAAACTCTGAAGAGAAGATTCTAGAGTCTAACAATGGAAAAGCAGATCAAAGGAATATTAAGAGGAAGAAGCGGCTCTTAAAGGAAGCAGCAAATGCAGATATGCGTGGTATTTGTTACTTGAGCCGAGTTCCTCCACACATGGATCCTTTGAGACTTCGTCAGATCCTCTCACAGTATGGGGAAATACAAAGAATTTATCTTGCACCCGAGGATGCTGCCAGTCAAGTACAACGAAAGCGTGCAGGAGGCTTTCGAGGACAGTTTTTTTCAGAAGGGTGGGTTGAATTTACTGATAAAAGAGTTGCCAAGAAGGTGGCTAATATGTTAAATGGTGAACAGATAGGAGGAAGGAAGAGGTCATCTTTCTACTATGATCTCTGGAACATCAAGTATTTGAGTAAATTCAAGTGGGATGATCTCACTGAAGAAACTGCTTACAAGCATGCCATTCGGGAGCAGAAACTGGCTTTAGAAATTTCTGCTGCCAAGAGGGAAAGGGATTTCTATCTTGCGAAAGTGGATAAATCACGTGCATTGAATTCCATTGAAGAACGGCTAAAGAAGAAGCAGAAGTTGCTAAAAGATTCAGAAATGAATTCTGCACTTGCTGATAGCCAGAAACTTCCAAAGTTGATCCGCAGCTTCCCACAAACACAACCAGTTGCACATTCTGCAGTACAAAACAAACAGAGACTATCTACAAATGTCCTGGCTGGGGTGTTTGGAAGTTCCTAG | 2784 | 43.35 | MEVIGISLNPMIIIVLALSFAILIISHSLLKLFVITSTPNPNLPPGCMGFPFVGETLSFLKPHHSNSIGTFLQHHCSRYGKVFKSHLFGWPAIVSCDRELNVFILQNDDKLFKVSYPKAMHGILGTNSLIIAAGHTHRKLRNVVVSFTSWCKSRPSFLHSLHNLSISLMDTWRSQTQLLFCKELKMFALSVMVKELLGIKANESIGSKILEEFETYMKGFVSLPLNLPGTPYSKAVKARGRLSYIVKEMMRERRRRGLLEGNDEDFLQVIMSNWKLSDEEIVSVVLDILLGGYETTATLMGLIVYFLAHSPPNVLAKLKDEHEAIRIGKRNGEYLNLEDYKQMDFTCNVIFEAMRCGNVVKFLHREALADVKFKDIVIPSGWKVHPVFSAIHLDPTLHPNPQQFNPWRWTVYLTAIAFWNLRSLVGARHQPPLVVDRRIIVACTTPDSVFCLDARGAAPSFIPIPYCPLLLRRVSPATGGSVCAESSQRPAPFTRTDSDPPGGELDRFFCGLHQQRHLDGGESHVYSSTVGERNHQRPLRPAERLLSTKMSKEESFEVNLTTDCSPESSKKRAKRRKNKKKQLLMEGVDVMEMKEVGSVQLGESNINSDSDKVKKKKKRKKSTQQYVEESSIKDEAGEYENRAETFMKEGSPFSNGGSEKIFEKRKIALEDAENERTDSMVRENSEEKILESNNGKADQRNIKRKKRLLKEAANADMRGICYLSRVPPHMDPLRLRQILSQYGEIQRIYLAPEDAASQVQRKRAGGFRGQFFSEGWVEFTDKRVAKKVANMLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKLALEISAAKRERDFYLAKVDKSRALNSIEERLKKKQKLLKDSEMNSALADSQKLPKLIRSFPQTQPVAHSAVQNKQRLSTNVLAGVFGSS | 927 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 35890580 | 35903906 | - | CcPI632755_09g021500.1 | Cco09g2150 | 188607 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g2150 | 927 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 719 | 801 | IPR000504 | GO:0003723(InterPro) | |
| Cco09g2150 | 927 | Gene3D | Cytochrome P450 | 35 | 417 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2150 | 927 | MobiDBLite | consensus disorder prediction | 536 | 551 | - | - | |
| Cco09g2150 | 927 | MobiDBLite | consensus disorder prediction | 601 | 634 | - | - | |
| Cco09g2150 | 927 | MobiDBLite | consensus disorder prediction | 522 | 582 | - | - | |
| Cco09g2150 | 927 | SMART | rrm1_1 | 720 | 804 | IPR000504 | GO:0003723(InterPro) | |
| Cco09g2150 | 927 | PANTHER | ACTIVATOR OF BASAL TRANSCRIPTION 1 | 623 | 926 | IPR039119 | GO:0000447(PANTHER)|GO:0000472(PANTHER)|GO:0000480(PANTHER)|GO:0003723(PANTHER)|GO:0005730(PANTHER)|GO:0034462(PANTHER) | |
| Cco09g2150 | 927 | Pfam | Cytochrome P450 | 44 | 410 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2150 | 927 | Coils | Coil | 862 | 882 | - | - | |
| Cco09g2150 | 927 | PRINTS | E-class P450 group I signature | 387 | 411 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2150 | 927 | PRINTS | E-class P450 group I signature | 280 | 297 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2150 | 927 | PRINTS | E-class P450 group I signature | 76 | 95 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2150 | 927 | MobiDBLite | consensus disorder prediction | 552 | 566 | - | - | |
| Cco09g2150 | 927 | Gene3D | - | 657 | 804 | IPR012677 | - | |
| Cco09g2150 | 927 | MobiDBLite | consensus disorder prediction | 481 | 505 | - | - | |
| Cco09g2150 | 927 | MobiDBLite | consensus disorder prediction | 673 | 700 | - | - | |
| Cco09g2150 | 927 | SUPERFAMILY | RNA-binding domain, RBD | 715 | 801 | IPR035979 | GO:0003676(InterPro) | |
| Cco09g2150 | 927 | Pfam | RNA recognition motif | 722 | 801 | IPR000504 | GO:0003723(InterPro) | |
| Cco09g2150 | 927 | SUPERFAMILY | Cytochrome P450 | 40 | 410 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco09g2150 | 927 | CDD | RRM_ABT1_like | 719 | 816 | IPR034353 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco09g2150 | Cco-Chr9:35890580 | Cco09g2432 | Cco-Chr9:38544503 | 3.40E-38 | dispersed | |
| Cco09g2150 | Cco-Chr9:35890580 | Cco07g1443 | Cco-Chr7:28529488 | 1.30E-58 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g2150 | K12639 | - | csv:101215045 | 665.225 |