Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2150 ATGGAAGTTATTGGTATAAGTTTGAACCCTATGATTATTATTGTATTAGCTTTGAGCTTTGCAATATTAATCATCTCCCACTCTCTTCTTAAACTCTTTGTAATTACTTCCACACCAAACCCTAATTTGCCTCCTGGCTGCATGGGCTTCCCCTTTGTTGGAGAAACTCTCAGCTTTCTCAAACCTCATCATTCTAACTCAATTGGAACCTTCCTTCAACACCATTGCTCCAGGTATGGGAAGGTTTTCAAATCTCATCTATTCGGTTGGCCGGCGATAGTGTCATGTGATCGAGAGCTTAACGTCTTCATTCTTCAGAACGACGATAAGCTTTTCAAAGTGAGTTATCCAAAAGCCATGCATGGCATTCTCGGAACAAATTCTTTGATTATCGCCGCCGGCCACACCCACCGGAAGCTCCGAAACGTGGTCGTTAGCTTCACCAGCTGGTGCAAATCCAGACCATCTTTCCTTCACTCCCTCCATAATCTCTCTATCTCTTTAATGGACACTTGGAGATCCCAAACTCAACTCCTTTTCTGCAAAGAACTCAAAATGTTTGCTTTAAGCGTTATGGTGAAGGAGCTATTGGGCATCAAAGCAAACGAGTCCATAGGATCAAAGATATTGGAAGAGTTCGAAACGTATATGAAAGGCTTTGTTTCTTTACCTTTAAATTTGCCAGGAACTCCCTATTCTAAAGCTGTTAAGGCTAGGGGGAGACTTTCTTACATTGTGAAAGAGATGATGAGAGAGAGGAGAAGGAGGGGATTATTGGAAGGGAATGATGAGGATTTTCTACAAGTGATAATGTCAAATTGGAAGCTTAGTGATGAAGAAATTGTGAGTGTTGTTTTGGACATATTGCTTGGAGGTTATGAGACAACAGCTACCCTCATGGGATTGATTGTCTATTTTCTTGCACATTCACCTCCTAATGTTCTTGCAAAATTAAAGGACGAACATGAAGCAATAAGAATTGGAAAAAGGAATGGAGAATATCTCAATTTGGAAGATTATAAGCAAATGGATTTCACATGCAATGTGATATTCGAAGCCATGAGATGTGGGAATGTGGTGAAGTTTTTACATAGAGAAGCTCTTGCAGATGTCAAATTCAAAGATATTGTCATACCCTCTGGATGGAAAGTTCATCCAGTTTTCTCAGCAATTCATCTTGATCCAACCCTCCATCCAAATCCTCAACAATTTAATCCTTGGAGATGGACTGTATATCTCACGGCCATCGCCTTCTGGAATTTGAGATCGTTGGTCGGAGCTCGACATCAGCCGCCACTAGTAGTCGATCGCCGCATCATCGTCGCATGCACCACGCCCGACTCCGTCTTTTGCCTAGACGCACGTGGCGCCGCCCCCAGTTTCATCCCCATCCCTTATTGTCCTCTTCTTCTCCGGCGAGTATCTCCGGCGACCGGTGGTAGTGTGTGCGCTGAATCCAGCCAGCGACCTGCACCGTTTACCCGCACGGACAGTGACCCTCCCGGCGGCGAATTAGATCGCTTTTTTTGCGGCTTACATCAGCAGCGGCATCTGGACGGCGGTGAATCACACGTTTACTCCTCCACAGTCGGTGAACGTAACCATCAGCGACCATTGCGCCCCGCCGAACGCCTCCTCTCGACTAAGATGTCCAAGGAGGAGAGCTTTGAAGTTAATTTAACAACCGACTGCAGCCCAGAATCTAGTAAGAAAAGAGCAAAAAGAAGAAAAAACAAAAAGAAGCAGTTATTGATGGAAGGTGTAGATGTCATGGAAATGAAAGAGGTAGGATCCGTTCAGCTGGGGGAAAGCAACATAAACTCCGATAGTGACAAAGTGAAAAAGAAGAAAAAGAGAAAGAAGAGTACTCAACAATATGTAGAGGAGAGCTCTATCAAGGATGAGGCAGGAGAATATGAAAATAGAGCAGAGACTTTTATGAAAGAGGGCAGTCCTTTCTCTAATGGTGGAAGTGAGAAAATTTTCGAAAAGAGGAAAATTGCATTGGAAGATGCTGAGAATGAAAGGACTGACAGCATGGTCAGAGAAAACTCTGAAGAGAAGATTCTAGAGTCTAACAATGGAAAAGCAGATCAAAGGAATATTAAGAGGAAGAAGCGGCTCTTAAAGGAAGCAGCAAATGCAGATATGCGTGGTATTTGTTACTTGAGCCGAGTTCCTCCACACATGGATCCTTTGAGACTTCGTCAGATCCTCTCACAGTATGGGGAAATACAAAGAATTTATCTTGCACCCGAGGATGCTGCCAGTCAAGTACAACGAAAGCGTGCAGGAGGCTTTCGAGGACAGTTTTTTTCAGAAGGGTGGGTTGAATTTACTGATAAAAGAGTTGCCAAGAAGGTGGCTAATATGTTAAATGGTGAACAGATAGGAGGAAGGAAGAGGTCATCTTTCTACTATGATCTCTGGAACATCAAGTATTTGAGTAAATTCAAGTGGGATGATCTCACTGAAGAAACTGCTTACAAGCATGCCATTCGGGAGCAGAAACTGGCTTTAGAAATTTCTGCTGCCAAGAGGGAAAGGGATTTCTATCTTGCGAAAGTGGATAAATCACGTGCATTGAATTCCATTGAAGAACGGCTAAAGAAGAAGCAGAAGTTGCTAAAAGATTCAGAAATGAATTCTGCACTTGCTGATAGCCAGAAACTTCCAAAGTTGATCCGCAGCTTCCCACAAACACAACCAGTTGCACATTCTGCAGTACAAAACAAACAGAGACTATCTACAAATGTCCTGGCTGGGGTGTTTGGAAGTTCCTAG 2784 43.35 MEVIGISLNPMIIIVLALSFAILIISHSLLKLFVITSTPNPNLPPGCMGFPFVGETLSFLKPHHSNSIGTFLQHHCSRYGKVFKSHLFGWPAIVSCDRELNVFILQNDDKLFKVSYPKAMHGILGTNSLIIAAGHTHRKLRNVVVSFTSWCKSRPSFLHSLHNLSISLMDTWRSQTQLLFCKELKMFALSVMVKELLGIKANESIGSKILEEFETYMKGFVSLPLNLPGTPYSKAVKARGRLSYIVKEMMRERRRRGLLEGNDEDFLQVIMSNWKLSDEEIVSVVLDILLGGYETTATLMGLIVYFLAHSPPNVLAKLKDEHEAIRIGKRNGEYLNLEDYKQMDFTCNVIFEAMRCGNVVKFLHREALADVKFKDIVIPSGWKVHPVFSAIHLDPTLHPNPQQFNPWRWTVYLTAIAFWNLRSLVGARHQPPLVVDRRIIVACTTPDSVFCLDARGAAPSFIPIPYCPLLLRRVSPATGGSVCAESSQRPAPFTRTDSDPPGGELDRFFCGLHQQRHLDGGESHVYSSTVGERNHQRPLRPAERLLSTKMSKEESFEVNLTTDCSPESSKKRAKRRKNKKKQLLMEGVDVMEMKEVGSVQLGESNINSDSDKVKKKKKRKKSTQQYVEESSIKDEAGEYENRAETFMKEGSPFSNGGSEKIFEKRKIALEDAENERTDSMVRENSEEKILESNNGKADQRNIKRKKRLLKEAANADMRGICYLSRVPPHMDPLRLRQILSQYGEIQRIYLAPEDAASQVQRKRAGGFRGQFFSEGWVEFTDKRVAKKVANMLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKLALEISAAKRERDFYLAKVDKSRALNSIEERLKKKQKLLKDSEMNSALADSQKLPKLIRSFPQTQPVAHSAVQNKQRLSTNVLAGVFGSS 927
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 35890580 35903906 - CcPI632755_09g021500.1 Cco09g2150 188607
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2150 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 719 801 IPR000504 GO:0003723(InterPro)
Cco09g2150 927 Gene3D Cytochrome P450 35 417 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco09g2150 927 MobiDBLite consensus disorder prediction 536 551 - -
Cco09g2150 927 MobiDBLite consensus disorder prediction 601 634 - -
Cco09g2150 927 MobiDBLite consensus disorder prediction 522 582 - -
Cco09g2150 927 SMART rrm1_1 720 804 IPR000504 GO:0003723(InterPro)
Cco09g2150 927 PANTHER ACTIVATOR OF BASAL TRANSCRIPTION 1 623 926 IPR039119 GO:0000447(PANTHER)|GO:0000472(PANTHER)|GO:0000480(PANTHER)|GO:0003723(PANTHER)|GO:0005730(PANTHER)|GO:0034462(PANTHER)
Cco09g2150 927 Pfam Cytochrome P450 44 410 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco09g2150 927 Coils Coil 862 882 - -
Cco09g2150 927 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco09g2150 927 PRINTS E-class P450 group I signature 280 297 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco09g2150 927 PRINTS E-class P450 group I signature 76 95 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco09g2150 927 MobiDBLite consensus disorder prediction 552 566 - -
Cco09g2150 927 Gene3D - 657 804 IPR012677 -
Cco09g2150 927 MobiDBLite consensus disorder prediction 481 505 - -
Cco09g2150 927 MobiDBLite consensus disorder prediction 673 700 - -
Cco09g2150 927 SUPERFAMILY RNA-binding domain, RBD 715 801 IPR035979 GO:0003676(InterPro)
Cco09g2150 927 Pfam RNA recognition motif 722 801 IPR000504 GO:0003723(InterPro)
Cco09g2150 927 SUPERFAMILY Cytochrome P450 40 410 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco09g2150 927 CDD RRM_ABT1_like 719 816 IPR034353 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2150 Cco-Chr9:35890580 Cco09g2432 Cco-Chr9:38544503 3.40E-38 dispersed
Cco09g2150 Cco-Chr9:35890580 Cco07g1443 Cco-Chr7:28529488 1.30E-58 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2150 K12639 - csv:101215045 665.225