Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2155 ATGGCGGCTTCTTCTTCTCTTTACTTTTTCTTGCTTCTTTTATCTCTTTCTTTCTTCTTGACTATGACTGCTCCAACTTCCAATTCCTCATTGCCTTTGTCTCTTCATCAACATCCTCATCTTGTTGTTCAAGAAGTTCAAAGGAGCATAAATGCATCAAGGAGAAACTTGGGATATTTCTCTTGCGGAACAGGAAACCCAATAGACGATTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGTAAACGCTTGGCCGATTGCGCCATTGGATTCGGCAAAAACGCCATTGGCGGCAAAAACGGCCGTTTCTACATAGTCACAGACGCCGGCGACGACGACCCTCTCAACCCACGCCCGGGCACTCTCCGACACGCAGTCATTCAAAACGAACCGTTATGGATCATTTTCAAACGAGACATGGTGATCCAACTCAAGCAAGAACTAGTAATGAACTCATTCAAAACCATCGACGGGCGTGGGGCCAGCGTCCACGTGGCAGGTGGGCCATGCATAACGATCCATTACGCGACAAATATCATAATCCACGGCATCCACATTCACGATTGCAAGAGAGGGGGAAATGGTAATATACGGGACTCCCCACAGCACTCTGGTTGGTGGACTGTATCGGACGGTGATGGAGTATCGATCTTTGGAGGAAAACATATCTGGATCGACCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGATGCGATTCATGGGTCCACAGCTATTACCATATCCAATAACTATATGACACATCATGATAAAGTGATGTTGTTGGGACATAGTGATTCCTACACACAAGATAAAGATATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTCGTTCAGCGAATGCCAAGATGCAGACATGGGTATTTCCACGTAGTGAACAACGATTACACCCACTGGGAAATGTACGCCATCGGAGGGAGTGCTTCGCCGACGATATACAGCCAAGGGAACAGATTTGCGGCGCCCTACAACCGCTTCCGGAAGGAGGTAACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGATGTTGAACGGCGCCTATTTCCGCCAGTCTGGCGCCGGCGCTGCTTCCAGCTATGCAAGAGCTTACAGCCTCAGCGCTAGACCCTCCTCTCTCGTCGGCTCTATCACCGTCACTGCCGGCGCCCTCAACTGCCGCAAGGGCTCCCGCTGCTAG 1245 49.88 MAASSSLYFFLLLLSLSFFLTMTAPTSNSSLPLSLHQHPHLVVQEVQRSINASRRNLGYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGKNGRFYIVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLKQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGKHIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFAAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35942371 35945702 + CcPI632755_09g021550.1 Cco09g2155 188612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2155 414 Pfam Pectate lyase 146 331 IPR002022 -
Cco09g2155 414 FunFam Pectate lyase 65 407 - -
Cco09g2155 414 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Cco09g2155 414 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Cco09g2155 414 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Cco09g2155 414 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Cco09g2155 414 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Cco09g2155 414 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Cco09g2155 414 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Cco09g2155 414 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Cco09g2155 414 SMART amb_all 140 337 IPR002022 -
Cco09g2155 414 Gene3D - 65 407 IPR012334 -
Cco09g2155 414 PANTHER PECTATE LYASE 18-RELATED 20 411 IPR045032 GO:0030570(InterPro)
Cco09g2155 414 SUPERFAMILY Pectin lyase-like 49 409 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0446 Cco-Chr3:4778487 Cco09g2155 Cco-Chr9:35942371 2.60E-122 dispersed
Cco04g1960 Cco-Chr4:33887630 Cco09g2155 Cco-Chr9:35942371 1.10E-123 dispersed
Cco06g0822 Cco-Chr6:9849896 Cco09g2155 Cco-Chr9:35942371 3.00E-168 dispersed
Cco07g0166 Cco-Chr7:1788127 Cco09g2155 Cco-Chr9:35942371 5.40E-172 dispersed
Cco08g0925 Cco-Chr8:21168709 Cco09g2155 Cco-Chr9:35942371 1.90E-141 dispersed
Cco08g1926 Cco-Chr8:30201351 Cco09g2155 Cco-Chr9:35942371 1.30E-185 dispersed
Cco09g2155 Cco-Chr9:35942371 Cco10g1473 Cco-Chr10:27827807 4.10E-129 dispersed
Cco09g2155 Cco-Chr9:35942371 Cco05g0410 Cco-Chr5:3388023 3.10E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2155 K01728 - csv:101217834 774.622