Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2168 ATGGCAGCAACCATTTCCACAATCTTTCTAATATCACTCTCTAATTTCTTTCTAATAATGTCATTAGGAGTGGAAAGCAGAGCACTTACTGGAGGTCTTTACGGCGCCGGACCATGGCAGACTGCCCACGCTACTTTCTACGGAGGGAATGACGCCTCCGGCACAATGGGCGGGGCGTGCGGTTATGGCAACTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGCTCAGCACAGCTCTGTTCAACGACGGCTACAGCTGCGGGGCTTGTTTTGAGATCAAGTGCGTGAATGACCCACAATGGTGCCATGCCGGTAACCCCTCCATCTTTGTCACAGCCACCAATTTTTGTCCTCCCAATTACGCTCTACCCAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCTCCATGCCCATGTTTCTTAAAATCGCCCAATATCGCGCTGGTATCGTCCCCGTCTCTTTTCGCAGGGTGGCATGTCGGAGGGAGGGAGGGATGAGGTTTACGATCAATGGGTTCAAATATTTCAATTTGGTATTGATAACCAATGTGGGTGGAGCAGGGGATATTGTGAGTGTGAGCATCAAGGGATCGAAGACAGGGTGGATGAGTATGACACGTAATTGGGGTCAAAACTGGCAGTCAAATACTGTTTTGGTGGGTCAATCACTTTCGTTTAGTGTCAAAGGCAGTGATGGTCGGATTTCAACTTCCTCCAATATTGTTCCTTCTCATTGGCAGTTTGGTCAAACTTTCACTGGCAAAAACTTCTGA 792 50.0 MAATISTIFLISLSNFFLIMSLGVESRALTGGLYGAGPWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVACRREGGMRFTINGFKYFNLVLITNVGGAGDIVSVSIKGSKTGWMSMTRNWGQNWQSNTVLVGQSLSFSVKGSDGRISTSSNIVPSHWQFGQTFTGKNF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36068482 36069454 + CcPI632755_09g021680.1 Cco09g2168 188625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2168 263 Gene3D - 172 263 IPR036749 -
Cco09g2168 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 260 IPR007117 -
Cco09g2168 263 FunFam Expansin 28 167 - -
Cco09g2168 263 Pfam Lytic transglycolase 74 161 IPR009009 -
Cco09g2168 263 SMART dpbb_1 74 161 IPR007112 -
Cco09g2168 263 PANTHER EXPANSIN-A15 21 263 IPR002963 GO:0009664(InterPro)
Cco09g2168 263 Gene3D - 31 167 IPR036908 -
Cco09g2168 263 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576(InterPro)
Cco09g2168 263 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576(InterPro)
Cco09g2168 263 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576(InterPro)
Cco09g2168 263 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576(InterPro)
Cco09g2168 263 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576(InterPro)
Cco09g2168 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Cco09g2168 263 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Cco09g2168 263 FunFam Expansin 171 263 - -
Cco09g2168 263 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Cco09g2168 263 PRINTS Expansin signature 182 203 IPR002963 GO:0009664(InterPro)
Cco09g2168 263 PRINTS Expansin signature 96 107 IPR002963 GO:0009664(InterPro)
Cco09g2168 263 PRINTS Expansin signature 246 262 IPR002963 GO:0009664(InterPro)
Cco09g2168 263 PRINTS Expansin signature 69 83 IPR002963 GO:0009664(InterPro)
Cco09g2168 263 PRINTS Expansin signature 110 120 IPR002963 GO:0009664(InterPro)
Cco09g2168 263 PRINTS Expansin signature 170 182 IPR002963 GO:0009664(InterPro)
Cco09g2168 263 PRINTS Expansin signature 146 159 IPR002963 GO:0009664(InterPro)
Cco09g2168 263 PRINTS Expansin signature 129 146 IPR002963 GO:0009664(InterPro)
Cco09g2168 263 PRINTS Expansin signature 217 238 IPR002963 GO:0009664(InterPro)
Cco09g2168 263 SUPERFAMILY Barwin-like endoglucanases 38 189 IPR036908 -
Cco09g2168 263 CDD DPBB_EXPA_N 38 166 - -
Cco09g2168 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 171 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0148 Cco-Chr3:1469472 Cco09g2168 Cco-Chr9:36068482 2.80E-120 dispersed
Cco07g0793 Cco-Chr7:17716892 Cco09g2168 Cco-Chr9:36068482 2.10E-78 dispersed
Cco07g0796 Cco-Chr7:17767058 Cco09g2168 Cco-Chr9:36068482 6.60E-34 dispersed
Cco09g2168 Cco-Chr9:36068482 Cco11g0985 Cco-Chr11:16321521 4.80E-99 dispersed
Cco02g2145 Cco-Chr2:34230991 Cco09g2168 Cco-Chr9:36068482 2.50E-124 wgd
Cco04g1004 Cco-Chr4:25639013 Cco09g2168 Cco-Chr9:36068482 2.00E-121 wgd
Cco07g0335 Cco-Chr7:3494809 Cco09g2168 Cco-Chr9:36068482 1.40E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2168 - - - 0.0