Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2177 ATGGCAGATGCAGAGGACATTCAGCCTCTTGTGTGTGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGATGCTCCCCGGGCAGTCTTCCCTAGCATTGTCGGCCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATGCTTATGTTGGCGATGAAGCTCAATCTAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGATATGGAAAAGATATGGCATCACACCTTCTATAACGAGCTTCGTGTCGCTCCAGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTTAACACCCCGGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTGTATGCCAGTGGTCGAACCACCGGCATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACAGTCCCCATCTATGAGGGCTATGCTCTCCCACATGCCATTCTTCGGCTCGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAAATTCTCACGGAGCGTGGTTATTCATTCACTACCACAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATTGCCCTTGACTATGAGCAAGAGCTTGAAACATCCAAAACCAGTTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACAATTGGCGCCGAGCGTTTTAGATGCCCGGAAGTTCTTTTCCAGCCATCCATGATAGGAATGGAAGCTGCAGGTATTCATGAAACCACATATAATTCCATCATGAAGTGCGATGTGGATATCAGGAAGGATCTGTATGGAAACATTGTCCTCTCTGGTGGTTCGACCATGTTTTCGGGCATTGCCGATAGAATGAGCAAGGAAATCTCTGCATTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAGAGAAAATACAGTGTCTGGATTGGTGGTTCTATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAGTCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAA 1134 47.18 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36136332 36137897 - CcPI632755_09g021770.1 Cco09g2177 188634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2177 377 Gene3D - 140 340 - -
Cco09g2177 377 Pfam Actin 5 377 IPR004000 -
Cco09g2177 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cco09g2177 377 PRINTS Actin signature 51 62 IPR004000 -
Cco09g2177 377 PRINTS Actin signature 238 254 IPR004000 -
Cco09g2177 377 PRINTS Actin signature 63 85 IPR004000 -
Cco09g2177 377 PRINTS Actin signature 142 161 IPR004000 -
Cco09g2177 377 PRINTS Actin signature 28 37 IPR004000 -
Cco09g2177 377 PRINTS Actin signature 117 130 IPR004000 -
Cco09g2177 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Cco09g2177 377 SMART actin_3 7 377 IPR004000 -
Cco09g2177 377 Gene3D - 10 371 - -
Cco09g2177 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Cco09g2177 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cco09g2177 377 FunFam Actin, muscle 182 273 - -
Cco09g2177 377 FunFam Actin, alpha skeletal muscle 3 173 - -
Cco09g2177 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cco09g2177 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cco09g2177 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cco09g2177 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cco09g2177 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cco09g2177 377 FunFam Actin, alpha skeletal muscle 331 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2177 Cco-Chr9:36136332 Cco10g1738 Cco-Chr10:30921785 1.80E-216 dispersed
Cco02g2157 Cco-Chr2:34320060 Cco09g2177 Cco-Chr9:36136332 9.90E-215 wgd
Cco04g1010 Cco-Chr4:25717641 Cco09g2177 Cco-Chr9:36136332 4.50E-215 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2177 K10355 - csv:101220611 745.732