Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2190 ATGGCGGGAAAGGGAGAGGGTCCGGCCATCGGTATTGATCTCGGTACCACTTACTCTTGTGTTGGAGTTTGGCAGCATGATCGTGTTGAGATTATTGCCAATGATCAAGGAAATCGGACGACGCCGTCGTATGTTGCTTTCACTGACACCGAACGACTCATCGGCGACGCTGCCAAGAACCAAGTCGCTATGAATCCTCTCAACACCGTCTTCGATGCGAAGCGGTTGATTGGAAGGAGATTCTCCGATCCCTCGGTCCAGAGCGACATGAAATTGTGGCCATTCAAGGTCATTGCCGGTCCGGGGGACAAACCTATGATTGTCGTCAATTACAAAGGCGAAGAGAAGCAATTCGCCGCTGAAGAAATCTCATCCATGGTCCTTACGAAAATGCGTGAGATAGCAGAAGCTTACCTCGGTACCTCCGTGAAGAACGCCGTCGTCACCGTTCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAGGACGCCGGAGTCATTGCCGGTCTTAATGTCATGCGGATCATAAACGAGCCTACAGCTGCTGCTATTGCTTATGGACTCGACAAAAAGGCGAGCAGTATTGGCGAGAAGAATGTTCTGATTTTTGATCTGGGTGGAGGAACATTTGATGTCTCTCTCCTCACAATTGAGGAAGGCATTTTCGAGGTGAAGGCAACTGCCGGTGACACCCATCTCGGCGGTGAGGATTTCGACAACAGATTGGTTAACCATTTTGTTCAAGAATTCAAGAGGAAGCATAAGAAAGACATCAGTGGAAATCCAAGGGCTCTCAGGAGATTGAGGACTGCTTGTGAAAGAGCCAAGAGAACCCTCTCATCCACTGCCCAAACTACAATCGAAATCGATTCTTTGTATGAAGGAATTGATTTCTACACAACCATTACTCGAGCTAGATTCGAAGAGCTCAACATGGACCTGTTTCGAAAGTGTATGGAACCAGTTGAGAAGTGTTTGAGAGATGCAAAGATGGACAAAAGCAGCGTCCATGATGTTGTCCTTGTTGGTGGTTCTACAAGAATTCCCAAAGTGCAGCAGCTATTGCAAGATTTCTTCAATGGCAAGGAACTTTGCAAGAGTATCAATCCTGATGAAGCAGTTGCTTATGGAGCTGCTGTCCAAGCCGCCATCTTGAGTGGTGAAGGAAACGAGAAGGTGCAAGACCTTCTTCTTTTGGATGTTACTCCTCTATCACTTGGTTTGGAAACTGCAGGAGGTGTAATGACTGTCCTAATCCCAAGGAACACGACCATTCCCACCAAGAAGGAACAAGTGTTCTCTACTTATTCGGATAACCAACCTGGTGTTCTTATTCAAGTCTACGAGGGTGAAAGGACAAGAACAAAAGATAACAACTTATTGGGCAAGTTTGAACTTTCTGGCATCCCTCCTGCTCCAAGAGGTGTTCCTCAGATTACTGTCTGCTTCGACATTGACGCCAACGGTATTCTAAACGTGTCTGCAGAGGATAAAACTACAGGACAGAAGAACAAGATCACCATTACCAACGACAAAGGAAGGTTGTCCAAAGAAGAGATTGAAAAATTGGTTCAGGAAGCAGAGAAATTCAAGGCTGAGGATGAAGAACACAAGAAGAAAGTCGAATCAAAGAATGCTTTAGAAAACTATGCTTACAACATGAGGAATACCATCAGAGATGAAAAGATCGGTGGTAAACTTGCCCCAGCTGACAAGAAGAAGATCGAGGATGCAGTTGAACAGGCTATCCAGTGGCTAGATAGCAACCAGCTGGCTGAGTCGGATGAGTTTGATGACAAGATGAAGGAACTTGAGTCGATTTGCAACCCCATCATAGCCAAGATGTACCAAGGCGGTGCCGACATGGGTGGTGCGGCCATGGATGATGATGCTCCTCCTTCTGGTGGCAGTGGCGCTGGTCCTAAGATTGAAGAAGTCGATTAA 1947 46.74 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIAGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMREIAEAYLGTSVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSIGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKFKAEDEEHKKKVESKNALENYAYNMRNTIRDEKIGGKLAPADKKKIEDAVEQAIQWLDSNQLAESDEFDDKMKELESICNPIIAKMYQGGADMGGAAMDDDAPPSGGSGAGPKIEEVD 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36255452 36257882 + CcPI632755_09g021900.1 Cco09g2190 188647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2190 648 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Cco09g2190 648 FunFam Heat shock 70 kDa protein 71 126 - -
Cco09g2190 648 FunFam Heat shock 70 kDa 391 545 - -
Cco09g2190 648 Gene3D - 192 366 - -
Cco09g2190 648 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Cco09g2190 648 FunFam Heat shock 70 kDa protein 539 648 - -
Cco09g2190 648 Gene3D - 71 126 - -
Cco09g2190 648 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Cco09g2190 648 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Cco09g2190 648 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Cco09g2190 648 Gene3D - 10 384 - -
Cco09g2190 648 FunFam Heat shock protein 70 10 196 - -
Cco09g2190 648 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cco09g2190 648 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Cco09g2190 648 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Cco09g2190 648 Gene3D Actin; Chain A, domain 4 235 318 - -
Cco09g2190 648 FunFam Heat shock 70 kDa protein 197 260 - -
Cco09g2190 648 Gene3D - 546 619 IPR029048 -
Cco09g2190 648 FunFam Heat shock 70 kDa 235 318 - -
Cco09g2190 648 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Cco09g2190 648 Coils Coil 514 541 - -
Cco09g2190 648 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Cco09g2190 648 MobiDBLite consensus disorder prediction 621 648 - -
Cco09g2190 648 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 623 IPR029048 -
Cco09g2190 648 PRINTS 70kDa heat shock protein signature 209 219 - -
Cco09g2190 648 PRINTS 70kDa heat shock protein signature 337 353 - -
Cco09g2190 648 PRINTS 70kDa heat shock protein signature 396 415 - -
Cco09g2190 648 PRINTS 70kDa heat shock protein signature 8 21 - -
Cco09g2190 648 PRINTS 70kDa heat shock protein signature 477 493 - -
Cco09g2190 648 PRINTS 70kDa heat shock protein signature 36 48 - -
Cco09g2190 648 PRINTS 70kDa heat shock protein signature 146 166 - -
Cco09g2190 648 PRINTS 70kDa heat shock protein signature 369 389 - -
Cco09g2190 648 PRINTS 70kDa heat shock protein signature 58 66 - -
Cco09g2190 648 PANTHER HEAT SHOCK PROTEIN 70KDA 9 582 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0431 Cco-Chr8:10290092 Cco09g2190 Cco-Chr9:36255452 2.90E-38 dispersed
Cco09g2190 Cco-Chr9:36255452 Cco09g2197 Cco-Chr9:36295047 0.00E+00 proximal
Cco01g0183 Cco-Chr1:1768804 Cco09g2190 Cco-Chr9:36255452 1.20E-231 transposed
Cco05g0607 Cco-Chr5:4932495 Cco09g2190 Cco-Chr9:36255452 1.00E-77 transposed
Cco05g1633 Cco-Chr5:22384606 Cco09g2190 Cco-Chr9:36255452 2.20E-72 transposed
Cco06g1114 Cco-Chr6:17122971 Cco09g2190 Cco-Chr9:36255452 1.10E-142 transposed
Cco09g1008 Cco-Chr9:9627176 Cco09g2190 Cco-Chr9:36255452 1.70E-141 transposed
Cco10g0954 Cco-Chr10:20739044 Cco09g2190 Cco-Chr9:36255452 7.70E-157 transposed
Cco11g1154 Cco-Chr11:22565194 Cco09g2190 Cco-Chr9:36255452 0.00E+00 transposed
Cco11g1724 Cco-Chr11:30072804 Cco09g2190 Cco-Chr9:36255452 2.00E-56 transposed
Cco04g1022 Cco-Chr4:25812226 Cco09g2190 Cco-Chr9:36255452 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2190 K03283 - csv:101211905 1230.31