Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g2196 | ATGGAATTTGCCGACGAGCTCACGGCCGGAGCCACAGCCTCCAATTCCAACCGCCACAAGCCCTCCGATACTAGAGACAGCGGCGAGCTCTCATCTTCCGACAACGACACCGAAGATGTACATCCTGTTTTTCCTAACATGCCCGCTTCACTTGCACCACCAGTGTTTCCCACTCTTCCTCTGCAAAGTAAAAGTAATGTAGCAATTCAGGCTGATATGGATGATAAATTGGAGACAATACAAAATATATGTCAGAAAATTGTGGACACCACAAACTTGTACTCATTTTCTAAATTGGATGACCAGCAAGTATATTCTCTTATGAGGCTGAGGGAAATTTCTCATCGGATTATCAATGACCGTGATTCAAGGGTGACAAGAAATGATGTGATTAGTGCTATGTGTTTTTACATCAACAGGCTGGCAGGTAAGTGCAAGGATATTGTTGACATTTTGAATAAGATGTCATACAAAGACTTGGATGACCAGCAAATGCAACAGCTATTGAGATTGAAAGAGCTCCTATGCGGGATTGTAGATGGAGCTAAAGACGTGGAAACTGAACCTTCCCATATTGTTGAACAGGGCATGGTAAGTGATATGTGGACGACTGAGAGTTTGGAGGTTGAGCCACTTGATTCCTGCAATGATGATGTACCACTTGGAGAGACACAAATTGTAATGGTTGAAGATGAACAGGCAGTAGCTGAAGTTAGGCTTGAGAATCAATATTGTGACCCACATGTTAAACACTCTGTCAGTTGGCCAAAAAATGGTAGCTTAACCTTAGAGTGGGTTGTGGAGATGATGAAAACTCTCGAGCTGTCTTCAAGAAACTACTCACCTGCAGAGTTTCAACTTATCATGCCAGTTTCTGTGGTAGATTCGATACTTGATGTAGCTGCGAGTATCCTTCACAAGGAACCAAACTGCGTGGAAGTTGACTGCCATGGAGAAGTTTCAAAAGTGGTTATAGTTGGGGACATTCATGGACATTATCATGACTTACTTCATCTATTCGAACTTGCTAATTTGCCATCTAAAAGCCAGTATTTCGTTTTTAATGGTAATTATGTGGACAGAGGAGCATGGGGACTCGAGGTGTTTTTGGTCTTATTGGCATGGAAGATCTTGATGCCTGATAGAGTATATATGCTCCGTGGAAATCATGAAACCAGAATTTGTACATCATCCTACGGTTTTGAGAAAGAAGTAAGGACAAAATATGGCGAGCAAGGTGAAAAAGTATATCACAGGTGCTTGGAAACGTTTAAGGAACTTCCTTTGGCTGCAATTATTGCTGGAAAAGTATATACAACACATGGAGGGTTATTTCGTAAACCATGCAATCCTGATGTGCAGAATGACAAGGAAAGGAAAACGCAGAAGCTGGAGATTGGATCCTTGCAAGACTTATCTAAGCTTGAAAGGTTTTTTATTGACATTCCAACTGAAGATGAAGATCCAAATATAGTTTTGGCAGATGTATTGTGGTCGGATCCTTCTAAGGTAGATGGTTTAAGGGAAAATCAAGCCAGAGGAGTGGGTCTACTGTGGGGTCCTGATTCTACTGAAGCATTCTTAAAGCTGTCCAATTTAAAGTTGATCATTAGGTCACATGAAGGCCCAGATTCAAGGGACGGTAAGATTGATTTTGATGATATGATAATGGGTTATAGCACAGATCATGACATAGAATCAGGGAAATTATATACTCTATTTAGCGCTCCAGATTTCCCTCAGTTTGGTCAGAAAAGTTATAATAACGAGGGAGCATATGCTACTTTGAAGCATCCAGATTTTGAAACTCCATCTTTCCATACATTTAAAGCTGTAGATAAACCGAAGATAGACGTTTGCTATTTTGGTTGTGAAGGACATGATGTAGATTTAGATTTGACATTAATGGCTCTAGCTGATGCTGTCTCTTCTAACAACTCTAGTCCTATTGAGATTCATTCTGGGGTTGATTTTGAGGCATTAGGCATATTAAACCCACCTTCTTGGAGCATTACATTGACAGATGATACTACAGGTACCCAAAATGTTCAGATTCCGAAGGCTCCCATGGTAGAAGGGCTGCCTTTGCCGCCTAGCATAGAGGAACCTCACAAGGCTGCTTATGAATACTTCTTGGAGCTCATTGCAGGACTGAAATTTATGCTCCAGACGACGGAAAATAAGAACAAGATTCATATTTCTCATCGGAAGAGGAAGAAATGCAATTAG | 2229 | 41.05 | MEFADELTAGATASNSNRHKPSDTRDSGELSSSDNDTEDVHPVFPNMPASLAPPVFPTLPLQSKSNVAIQADMDDKLETIQNICQKIVDTTNLYSFSKLDDQQVYSLMRLREISHRIINDRDSRVTRNDVISAMCFYINRLAGKCKDIVDILNKMSYKDLDDQQMQQLLRLKELLCGIVDGAKDVETEPSHIVEQGMVSDMWTTESLEVEPLDSCNDDVPLGETQIVMVEDEQAVAEVRLENQYCDPHVKHSVSWPKNGSLTLEWVVEMMKTLELSSRNYSPAEFQLIMPVSVVDSILDVAASILHKEPNCVEVDCHGEVSKVVIVGDIHGHYHDLLHLFELANLPSKSQYFVFNGNYVDRGAWGLEVFLVLLAWKILMPDRVYMLRGNHETRICTSSYGFEKEVRTKYGEQGEKVYHRCLETFKELPLAAIIAGKVYTTHGGLFRKPCNPDVQNDKERKTQKLEIGSLQDLSKLERFFIDIPTEDEDPNIVLADVLWSDPSKVDGLRENQARGVGLLWGPDSTEAFLKLSNLKLIIRSHEGPDSRDGKIDFDDMIMGYSTDHDIESGKLYTLFSAPDFPQFGQKSYNNEGAYATLKHPDFETPSFHTFKAVDKPKIDVCYFGCEGHDVDLDLTLMALADAVSSNNSSPIEIHSGVDFEALGILNPPSWSITLTDDTTGTQNVQIPKAPMVEGLPLPPSIEEPHKAAYEYFLELIAGLKFMLQTTENKNKIHISHRKRKKCN | 742 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 36285909 | 36293712 | + | CcPI632755_09g021960.1 | Cco09g2196 | 188653 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g2196 | 742 | SMART | pp2a_7 | 289 | 613 | IPR006186 | GO:0016787(InterPro) | |
| Cco09g2196 | 742 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Cco09g2196 | 742 | ProSitePatterns | Serine/threonine specific protein phosphatases signature. | 386 | 391 | IPR006186 | GO:0016787(InterPro) | |
| Cco09g2196 | 742 | Gene3D | - | 221 | 625 | IPR029052 | - | |
| Cco09g2196 | 742 | SUPERFAMILY | Metallo-dependent phosphatases | 277 | 617 | IPR029052 | - | |
| Cco09g2196 | 742 | PANTHER | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED | 80 | 620 | IPR051134 | - | |
| Cco09g2196 | 742 | Pfam | Calcineurin-like phosphoesterase | 322 | 541 | IPR004843 | GO:0016787(InterPro) | |
| Cco09g2196 | 742 | PRINTS | Serine/threonine phosphatase family signature | 352 | 379 | IPR006186 | GO:0016787(InterPro) | |
| Cco09g2196 | 742 | PRINTS | Serine/threonine phosphatase family signature | 569 | 585 | IPR006186 | GO:0016787(InterPro) | |
| Cco09g2196 | 742 | PRINTS | Serine/threonine phosphatase family signature | 422 | 448 | IPR006186 | GO:0016787(InterPro) | |
| Cco09g2196 | 742 | PRINTS | Serine/threonine phosphatase family signature | 322 | 349 | IPR006186 | GO:0016787(InterPro) | |
| Cco09g2196 | 742 | PRINTS | Serine/threonine phosphatase family signature | 385 | 409 | IPR006186 | GO:0016787(InterPro) | |
| Cco09g2196 | 742 | PRINTS | Serine/threonine phosphatase family signature | 475 | 502 | IPR006186 | GO:0016787(InterPro) | |
| Cco09g2196 | 742 | MobiDBLite | consensus disorder prediction | 19 | 36 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco09g2196 | Cco-Chr9:36285909 | Cco10g0008 | Cco-Chr10:163483 | 2.30E-114 | dispersed | |
| Cco09g2196 | Cco-Chr9:36285909 | Cco09g2201 | Cco-Chr9:36338287 | 3.10E-10 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g2196 | K04460 | - | csv:101211172 | 1410.59 |