Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2209 ATGGAGCATCCCGCCGGAATGTTGAATCAGGCAAAGCCATTTATTGCAGTGATTCTTCAGCAATTCATCTCTGCCGGAATGGTCATCATTTCCAAGTTGGCTCTCAACCAAGGACTCAACCAGCACGTTTTAGTCGTCTACCGCTACACCATTGCTACCATTGTCGTCGCTCCGTTCGCTTTCATCTTTGAGAGGAAAGTGAGACCCAAGATGACTTGGTCCATTTTTGGGAAGGTTGTGTTGCTGGGACTATTGGAGCCTGCACTAGACCAAAACTTGTATTATACAGGCATGAAGTACACTACAGCAACCTTTGCATCCGCTATGACTAATATGGTCCCTGGCCTCGTCTTCCTCATGGCTTGGCTTGTTCGGCTTGAGAAGGTCGACGTAAGGCAGTTGTCGAGCCAGGCGAAGATATTAGGAACAGTGGTGACAGTGGGAGGGGCGATGATAATGACTCTGGTGAGAGGACCAATCTTGAATCTGCCATGGACAAATCACAACCACCATGACCATTCTGCAGCTGCAACTAACCAGCAAGATCTTCTCAAGGGTTCTCTCATGATCACTATTGGTTGTATTCTTTGGTCTGTTTTCAATGTTCTTCAGGCAATTACAGTAAAAGTATACCCAGCACAACTCTCCTTAACAGCTTTGATATGCTTCACCGGCGCCATACAAGCCTCAGTAATAGCTTTCGCAATGGAAGGGCACAAACCTGCGGCCTGGTCATTACATTTAGATTCAACCCTCTTAGCTCCTTTGTATAGTGGAATCATGTCTTCAGGGGTTTCATATACTATCCAAGCAGCAGTAATGAAAAGGAAAGGGCCAGTTTTTGCAAGTACATTCAGTCCCCTGAGCATGATTATTGTTGCGATCATTAGTTCATTCGCATTATCCGAGGTATTATTCTTCGGAAGGGTTATTGGAGCAGCTGTAATTATTACAGGCCTTTATTTGGTTCTGTGGGGTAAAATCAAGGATCACGCTCTATACAAATCAGATAGTGAGAAGATGGCCCCATCAGATCAGAAACTGACTGCCATAACTGACAAACCTAAGACTTCAGATAAAGAACTAGGAGTTGATCTTGCTAGGATAAAAACAATGGATGATTCTGTTTGA 1131 44.47 MEHPAGMLNQAKPFIAVILQQFISAGMVIISKLALNQGLNQHVLVVYRYTIATIVVAPFAFIFERKVRPKMTWSIFGKVVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMVPGLVFLMAWLVRLEKVDVRQLSSQAKILGTVVTVGGAMIMTLVRGPILNLPWTNHNHHDHSAAATNQQDLLKGSLMITIGCILWSVFNVLQAITVKVYPAQLSLTALICFTGAIQASVIAFAMEGHKPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAVMKRKGPVFASTFSPLSMIIVAIISSFALSEVLFFGRVIGAAVIITGLYLVLWGKIKDHALYKSDSEKMAPSDQKLTAITDKPKTSDKELGVDLARIKTMDDSV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36453328 36455710 + CcPI632755_09g022090.1 Cco09g2209 188666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2209 376 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020(InterPro)
Cco09g2209 376 Pfam EamA-like transporter family 15 148 IPR000620 GO:0016020(InterPro)
Cco09g2209 376 PANTHER WAT1-RELATED PROTEIN 15 338 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco09g2209 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 328 - -
Cco09g2209 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0317 Cco-Chr7:3183075 Cco09g2209 Cco-Chr9:36453328 4.20E-109 dispersed
Cco07g0318 Cco-Chr7:3229658 Cco09g2209 Cco-Chr9:36453328 2.70E-111 dispersed
Cco09g2207 Cco-Chr9:36400063 Cco09g2209 Cco-Chr9:36453328 8.50E-99 dispersed
Cco09g2209 Cco-Chr9:36453328 Cco10g1627 Cco-Chr10:29623308 1.60E-87 dispersed
Cco09g2208 Cco-Chr9:36426993 Cco09g2209 Cco-Chr9:36453328 1.70E-91 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2209 - - - 0.0