Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g2212 | ATGCCAATCCATAAATTTTCAATCGGATCACCTGGAGAGGCTAGCCAACCGGACGCGATCAAGGCCGCATTTGCCGAATTCTTCTCCATGATCATCTTTGTTTTCGCCGGACAAGGATCCGGATTGGCTTTTGATAAGTTAACGGACGGTGGATCTGCGACGCCGTCGGGGCTGATAGTCGCATCTCTGGCTCATGCTTTTGCGTTATTTGTGGCGGTCTCCGTCGGAGCTAATATCTCCGGCGGCCATGTAAATCCGGCAGTTACGTTTGGTGCGCTTATTGGTGGAAACATATCGTTCTTTAGAAGTATAATGTATTGGTTCGCTCAATTGCTTGGTTCTGTTGTTGCGTGCTTCCTTCTTAAGTTTGCGACTGGTGGAAAGGTAACACCAGCATTTGCCTTATCATCAGGAGTTTCTGTGTGGAATGCATTTATATTTGAGGCAGTGATGACTTTTGGATTAGTATATACAGTGTATGCAACAGCAGTAGATCCAAAGAGGGAGAATTTGGGCATAATTGCCCCAATTTCTATTGGTTTCATTGTTGGTGCTAACATTTTGGTTGGTGGTGCTTTTGATGGCGCTTCCATGAACCCTGCAGTCTCCTTTGGCCCTGCTGTAGTCACCTGGTCATGGACCCATCACTGGGTCTACTGGCTTGGTCCAATGGCTGGTGCAGCCATTGCTACCATTGTCTATGACACTCTCTTTATCTCAGACTCCATGCATGATCCTCTTACTCAGTATAATGATTTCTAG | 762 | 46.46 | MPIHKFSIGSPGEASQPDAIKAAFAEFFSMIIFVFAGQGSGLAFDKLTDGGSATPSGLIVASLAHAFALFVAVSVGANISGGHVNPAVTFGALIGGNISFFRSIMYWFAQLLGSVVACFLLKFATGGKVTPAFALSSGVSVWNAFIFEAVMTFGLVYTVYATAVDPKRENLGIIAPISIGFIVGANILVGGAFDGASMNPAVSFGPAVVTWSWTHHWVYWLGPMAGAAIATIVYDTLFISDSMHDPLTQYNDF | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 36467524 | 36470349 | - | CcPI632755_09g022120.1 | Cco09g2212 | 188669 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g2212 | 253 | CDD | MIP | 21 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco09g2212 | 253 | PRINTS | Major intrinsic protein family signature | 217 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco09g2212 | 253 | PRINTS | Major intrinsic protein family signature | 102 | 121 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco09g2212 | 253 | PRINTS | Major intrinsic protein family signature | 147 | 165 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco09g2212 | 253 | PRINTS | Major intrinsic protein family signature | 65 | 89 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco09g2212 | 253 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco09g2212 | 253 | PRINTS | Major intrinsic protein family signature | 180 | 202 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco09g2212 | 253 | Pfam | Major intrinsic protein | 14 | 234 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cco09g2212 | 253 | SUPERFAMILY | Aquaporin-like | 16 | 241 | IPR023271 | - | |
Cco09g2212 | 253 | ProSitePatterns | MIP family signature. | 83 | 91 | IPR022357 | - | |
Cco09g2212 | 253 | FunFam | Probable aquaporin TIP1-1 | 4 | 252 | - | - | |
Cco09g2212 | 253 | PANTHER | AQUAPORIN-8 | 6 | 244 | IPR034294 | GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
Cco09g2212 | 253 | Gene3D | Glycerol uptake facilitator protein. | 5 | 251 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g2212 | Cco-Chr9:36467524 | Cco10g1977 | Cco-Chr10:33302486 | 3.80E-85 | dispersed | |
Cco09g2212 | Cco-Chr9:36467524 | Cco04g1150 | Cco-Chr4:26865090 | 3.70E-96 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g2212 | K09873 | - | csv:101222909 | 475.322 |