Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2217 ATGGAGATTACATACTCATCACCTAGCGCCACCAGTCTTGCTTTCTCTAATTCTGCTCTTTCCGCCATGCCTGCCTCCGGCCGGCCTGTCAAGGTCATTCCATTGCAGCATCCTAGTACGACGTCCGCCTCCTCGGCCGGTGGTTTCTACGCCGGCACTCTGGTGAAGTCATGGACGACGAAGGTTAAGCGGATGACTTGGATTCACTGGATGGAGCTTCTGTTACCTTGCTCCCGTTGGATTAGAACGTATAAATGGCGGGAGTATTTACAGAGCGATATCTTGTCCGGGATTACTATTGGCATCATGCTCGTTCCGCAGGCAATGTCTTATGCAAAACTAGCCGGGCTTCAACCTATATACGGACTTTATTCCGGTTTTCTCCCTTTGTTCGTCTATGCAATTTTTGGTTCTTCTCGTCAGCTTGCAGTTGGTCCAGTAGCATTGGTTTCTCTACTGGTTTCCAATGTCCTGGGTGGAATTGTCAACTCATCTGAGGAATTATATACTGAACTCGCAATATTACTGGCACTTATGGTTGGAATATTGGAATGCGTGATGGGTCTCTTGAGGCTTGGATGGCTTATTCGCTTTATCAGCCACTCTGTAATCTCTGGCTTTACTACAGCTTCTGCCTTTGTGATTGGATTATCCCAAGTGAAATACTTTCTGGGGTATGATGTATCAAGAAGTAGCAGAATCGTGCCTCTAATTGAGAGCATAATAGCTGGAGCAGACGGGTTCTTATGGGCACCTTTTATAATGGGATCAGTCATCCTTGCGGTACTTCAAATCATGAAGCATTTGGGAAAAACAAGGAAGCACTTACGGTTTCTCAGAGTTGCTGGTCCCCTTACAGCCGTTGTTTTGGGTACAACTTTGACGAAAGTATTAAATCTACCTTCCATTACTTTGGTTGGAGACATTCCCCAAGGCCTTCCAATGTTTTCTATTCCTAAAAGATTTGAGCACGTGAAGTCGTTGATTCCAACTGCCTTTCTGATCACTGGAGTGGCTATATTGGAATCTGTTGGGATTGCGAAAGCATTAGCAGCCAAGAACGGGTACGAGTTAGATTCAAATCAGGAGTTATTTGGCCTTGGAGTAGCCAATGTTGTCGGCTCATTTTTTTCTGCATATCCCACAACAGGTTCTTTCTCAAGATCAGCTGTGAACCATGAAAGTGGAGCAAAAACTAGCTTATCTCAGATTGTTACAGGAATCATTATGGGCGGTGCCCTTCTTTTCTTGACTCCGCTGTTTGAGCACATTCCTCAGTGTGCTTTGGCTGCCATTGTCATCTCTGCGGTTTTAACTTTGGTGGATTACGAGGAAGCTATTTTTTTGTGGCGTATAGATAAGAAAGATTTTCTTCTTTGGGTGATTACTGCCATTACTACGTTGTTCCTTGGTATTGAGATTGGTGTCTTAATTGGGGTGGGTGTTTCACTGGTCTTTGTCATTCACGAATCTGCAAATCCACATATGGCTGTATTGGGGCGTCTTCCTGGCACCACTGTGTATAGAAATATTCAACAGTATCCTGAGGCATATACCTATAATGGGATCGTGATTGTTCGAATTGATGCACCAATTTATTTTGCAAACACGAGTTACATCAAAGAGAGGTTACGTGATTATGAAGTTGAAGTGGATCGATCTACTGGTCGTGGACCGGACGTTGAAAGAGTCTATTTTGTGATTATAGAGATGGCACCTGTTACTTACATAGATTCAAGTGCTGTCCAAGCTGTAAAAGAATTGTATCAAGAGTACAAACTTCGCGATATTAAGATTGCCATTTCCAATCCGAATCGAGATGTTCTGCTTACATTTTCAAGATCTGGCATCGTCGAGCTTATTGGCAAGGAGTGGTTTTTTGTGAGAGTTCATGATGCAGTTCAAGTTTGTCTTCAACATGTGGAGAGCTTAAATGAAACAAACAAAATATCAGATCCATCACCTAAAGATGGATCATCAAGCTTTCTCCAAAGTTTACTGAAGTCTAGAAGTGAGGATTTATCAGTGAGCCAATTAGAGTCAGGCTTCCAAAAATCCCCAAGTTCCAATGAGATCGACCCTCAATTGGAACCTTTACTGACTCGAAAGCCTTGA 2115 43.26 MEITYSSPSATSLAFSNSALSAMPASGRPVKVIPLQHPSTTSASSAGGFYAGTLVKSWTTKVKRMTWIHWMELLLPCSRWIRTYKWREYLQSDILSGITIGIMLVPQAMSYAKLAGLQPIYGLYSGFLPLFVYAIFGSSRQLAVGPVALVSLLVSNVLGGIVNSSEELYTELAILLALMVGILECVMGLLRLGWLIRFISHSVISGFTTASAFVIGLSQVKYFLGYDVSRSSRIVPLIESIIAGADGFLWAPFIMGSVILAVLQIMKHLGKTRKHLRFLRVAGPLTAVVLGTTLTKVLNLPSITLVGDIPQGLPMFSIPKRFEHVKSLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANVVGSFFSAYPTTGSFSRSAVNHESGAKTSLSQIVTGIIMGGALLFLTPLFEHIPQCALAAIVISAVLTLVDYEEAIFLWRIDKKDFLLWVITAITTLFLGIEIGVLIGVGVSLVFVIHESANPHMAVLGRLPGTTVYRNIQQYPEAYTYNGIVIVRIDAPIYFANTSYIKERLRDYEVEVDRSTGRGPDVERVYFVIIEMAPVTYIDSSAVQAVKELYQEYKLRDIKIAISNPNRDVLLTFSRSGIVELIGKEWFFVRVHDAVQVCLQHVESLNETNKISDPSPKDGSSSFLQSLLKSRSEDLSVSQLESGFQKSPSSNEIDPQLEPLLTRKP 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36508656 36517557 - CcPI632755_09g022170.1 Cco09g2217 188674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2217 704 FunFam Sulfate transporter 31 493 640 - -
Cco09g2217 704 ProSitePatterns SLC26A transporters signature. 119 140 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cco09g2217 704 Pfam STAS domain 514 633 IPR002645 -
Cco09g2217 704 Gene3D STAS domain 493 641 IPR036513 -
Cco09g2217 704 MobiDBLite consensus disorder prediction 678 695 - -
Cco09g2217 704 Pfam Sulfate permease family 90 463 IPR011547 GO:0016020(InterPro)
Cco09g2217 704 CDD STAS_SulP_like_sulfate_transporter 514 630 - -
Cco09g2217 704 NCBIfam sulfate permease 76 633 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g2217 704 SUPERFAMILY SpoIIaa-like 515 637 IPR036513 -
Cco09g2217 704 MobiDBLite consensus disorder prediction 678 704 - -
Cco09g2217 704 PANTHER SULFATE TRANSPORTER 63 639 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g2217 704 ProSiteProfiles STAS domain profile. 513 637 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2217 Cco-Chr9:36508656 Cco11g0144 Cco-Chr11:1496493 7.60E-91 dispersed
Cco09g2217 Cco-Chr9:36508656 Cco11g1584 Cco-Chr11:28730051 2.20E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2217 K18059 - csv:101202870 1262.28