Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2240 ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCCGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTTCATTAGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAAAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCGGCTGTTGCAGCCGCTCAGGCTGCGGTGGAGGTCGTTCGGCTCACTACCATCCCTCGGTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGTTATATGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGAGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACCGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGAAGACATTGCCAAAGCTTATGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCAACGAGCCAAAAAACGAGCCGAGCTCCGAGTCACCAATCACCGGCGACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCTGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGAGGTACCGGCGACACAGCATCGCTGGATCATCGGTGAGGGATGATGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCCACAGAAGCAGCCAGGGCTAGGTCCCGATTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGCGTTTCCAGAGAAGGGACCGGCGAGTATCGGCGCAAAGAAACGGCTGTCGTTCCCCGCCTCGCCGACGAATTCGAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGATCAAGAATGTTGCAGAGAGAGATTTTACCGGCGAGAGCAGATAG 1458 50.55 MGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPASLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAVEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIEDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAAFPEKGPASIGAKKRLSFPASPTNSRRHSGPPKIDASPIKNVAERDFTGESR 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36699663 36702921 - CcPI632755_09g022400.1 Cco09g2240 188697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2240 485 MobiDBLite consensus disorder prediction 324 351 - -
Cco09g2240 485 MobiDBLite consensus disorder prediction 395 411 - -
Cco09g2240 485 Coils Coil 177 197 - -
Cco09g2240 485 PANTHER IQ-DOMAIN 5-RELATED 6 439 - -
Cco09g2240 485 Gene3D iswi atpase 111 149 - -
Cco09g2240 485 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Cco09g2240 485 ProSiteProfiles IQ motif profile. 114 142 - -
Cco09g2240 485 MobiDBLite consensus disorder prediction 319 485 - -
Cco09g2240 485 MobiDBLite consensus disorder prediction 377 394 - -
Cco09g2240 485 MobiDBLite consensus disorder prediction 1 35 - -
Cco09g2240 485 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2240 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0040 Cco-Chr1:283504 Cco09g2240 Cco-Chr9:36699663 7.10E-24 dispersed
Cco03g1216 Cco-Chr3:23940354 Cco09g2240 Cco-Chr9:36699663 3.80E-33 dispersed
Cco04g1083 Cco-Chr4:26295756 Cco09g2240 Cco-Chr9:36699663 5.40E-104 dispersed
Cco04g2133 Cco-Chr4:35160524 Cco09g2240 Cco-Chr9:36699663 2.50E-33 dispersed
Cco05g1063 Cco-Chr5:9501604 Cco09g2240 Cco-Chr9:36699663 2.90E-22 dispersed
Cco05g2036 Cco-Chr5:29436599 Cco09g2240 Cco-Chr9:36699663 2.30E-29 dispersed
Cco05g2347 Cco-Chr5:31983545 Cco09g2240 Cco-Chr9:36699663 1.70E-109 dispersed
Cco06g0115 Cco-Chr6:1071576 Cco09g2240 Cco-Chr9:36699663 3.50E-26 dispersed
Cco06g0649 Cco-Chr6:7177405 Cco09g2240 Cco-Chr9:36699663 2.80E-17 dispersed
Cco07g1069 Cco-Chr7:24212594 Cco09g2240 Cco-Chr9:36699663 5.80E-25 dispersed
Cco07g1412 Cco-Chr7:28256124 Cco09g2240 Cco-Chr9:36699663 1.00E-09 dispersed
Cco07g1596 Cco-Chr7:29989998 Cco09g2240 Cco-Chr9:36699663 2.50E-22 dispersed
Cco09g0024 Cco-Chr9:209671 Cco09g2240 Cco-Chr9:36699663 1.20E-09 dispersed
Cco09g0069 Cco-Chr9:604269 Cco09g2240 Cco-Chr9:36699663 9.60E-22 dispersed
Cco01g0795 Cco-Chr1:8378250 Cco09g2240 Cco-Chr9:36699663 8.00E-28 transposed
Cco02g0264 Cco-Chr2:2423519 Cco09g2240 Cco-Chr9:36699663 2.30E-13 transposed
Cco05g0021 Cco-Chr5:242182 Cco09g2240 Cco-Chr9:36699663 5.80E-31 transposed
Cco06g0276 Cco-Chr6:3020822 Cco09g2240 Cco-Chr9:36699663 1.00E-28 transposed
Cco10g1558 Cco-Chr10:28781251 Cco09g2240 Cco-Chr9:36699663 2.20E-20 transposed
Cco10g2042 Cco-Chr10:33797420 Cco09g2240 Cco-Chr9:36699663 7.50E-78 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g2240 . 1 479 IQD Protein Family AT3G52290 52.9 4.8e-104 375.2
Cco05g2347 . 1768 1977 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Cco03g1216 . 34 441 IQD Protein Family AT3G22190 57.2 1.0e-95 347.4
Cco05g2036 . 1 438 IQD Protein Family AT2G26180 61.6 2.7e-120 429.1
Cco04g2133 . 25 298 IQD Protein Family AT2G33990 52.9 1.2e-62 236.9
Cco07g1069 . 109 292 IQD Protein Family AT2G33990 52.9 1.5e-47 186.8
Cco04g2133 . 80 246 IQD Protein Family AT3G15050 61.7 2.5e-55 212.6
Cco07g1069 . 112 285 IQD Protein Family AT3G15050 61.0 3.0e-53 205.7
Cco01g0795 . 121 473 IQD Protein Family AT5G13460 50.7 3.3e-76 282.7
Cco06g0276 . 1 508 IQD Protein Family AT4G00820 51.5 9.7e-115 411.0
Cco03g1666 . 1 391 IQD Protein Family AT3G16490 50.2 2.0e-64 243.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40