Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g2240 | ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCCGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTTCATTAGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAAAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCGGCTGTTGCAGCCGCTCAGGCTGCGGTGGAGGTCGTTCGGCTCACTACCATCCCTCGGTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGTTATATGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGAGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACCGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGAAGACATTGCCAAAGCTTATGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCAACGAGCCAAAAAACGAGCCGAGCTCCGAGTCACCAATCACCGGCGACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCTGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGAGGTACCGGCGACACAGCATCGCTGGATCATCGGTGAGGGATGATGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCCACAGAAGCAGCCAGGGCTAGGTCCCGATTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGCGTTTCCAGAGAAGGGACCGGCGAGTATCGGCGCAAAGAAACGGCTGTCGTTCCCCGCCTCGCCGACGAATTCGAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGATCAAGAATGTTGCAGAGAGAGATTTTACCGGCGAGAGCAGATAG | 1458 | 50.55 | MGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPASLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAVEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIEDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAAFPEKGPASIGAKKRLSFPASPTNSRRHSGPPKIDASPIKNVAERDFTGESR | 485 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 36699663 | 36702921 | - | CcPI632755_09g022400.1 | Cco09g2240 | 188697 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g2240 | 485 | MobiDBLite | consensus disorder prediction | 324 | 351 | - | - | |
| Cco09g2240 | 485 | MobiDBLite | consensus disorder prediction | 395 | 411 | - | - | |
| Cco09g2240 | 485 | Coils | Coil | 177 | 197 | - | - | |
| Cco09g2240 | 485 | PANTHER | IQ-DOMAIN 5-RELATED | 6 | 439 | - | - | |
| Cco09g2240 | 485 | Gene3D | iswi atpase | 111 | 149 | - | - | |
| Cco09g2240 | 485 | SMART | iq_5 | 113 | 135 | IPR000048 | GO:0005515(InterPro) | |
| Cco09g2240 | 485 | ProSiteProfiles | IQ motif profile. | 114 | 142 | - | - | |
| Cco09g2240 | 485 | MobiDBLite | consensus disorder prediction | 319 | 485 | - | - | |
| Cco09g2240 | 485 | MobiDBLite | consensus disorder prediction | 377 | 394 | - | - | |
| Cco09g2240 | 485 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Cco09g2240 | 485 | Pfam | IQ calmodulin-binding motif | 117 | 135 | IPR000048 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g0040 | Cco-Chr1:283504 | Cco09g2240 | Cco-Chr9:36699663 | 7.10E-24 | dispersed | |
| Cco03g1216 | Cco-Chr3:23940354 | Cco09g2240 | Cco-Chr9:36699663 | 3.80E-33 | dispersed | |
| Cco04g1083 | Cco-Chr4:26295756 | Cco09g2240 | Cco-Chr9:36699663 | 5.40E-104 | dispersed | |
| Cco04g2133 | Cco-Chr4:35160524 | Cco09g2240 | Cco-Chr9:36699663 | 2.50E-33 | dispersed | |
| Cco05g1063 | Cco-Chr5:9501604 | Cco09g2240 | Cco-Chr9:36699663 | 2.90E-22 | dispersed | |
| Cco05g2036 | Cco-Chr5:29436599 | Cco09g2240 | Cco-Chr9:36699663 | 2.30E-29 | dispersed | |
| Cco05g2347 | Cco-Chr5:31983545 | Cco09g2240 | Cco-Chr9:36699663 | 1.70E-109 | dispersed | |
| Cco06g0115 | Cco-Chr6:1071576 | Cco09g2240 | Cco-Chr9:36699663 | 3.50E-26 | dispersed | |
| Cco06g0649 | Cco-Chr6:7177405 | Cco09g2240 | Cco-Chr9:36699663 | 2.80E-17 | dispersed | |
| Cco07g1069 | Cco-Chr7:24212594 | Cco09g2240 | Cco-Chr9:36699663 | 5.80E-25 | dispersed | |
| Cco07g1412 | Cco-Chr7:28256124 | Cco09g2240 | Cco-Chr9:36699663 | 1.00E-09 | dispersed | |
| Cco07g1596 | Cco-Chr7:29989998 | Cco09g2240 | Cco-Chr9:36699663 | 2.50E-22 | dispersed | |
| Cco09g0024 | Cco-Chr9:209671 | Cco09g2240 | Cco-Chr9:36699663 | 1.20E-09 | dispersed | |
| Cco09g0069 | Cco-Chr9:604269 | Cco09g2240 | Cco-Chr9:36699663 | 9.60E-22 | dispersed | |
| Cco01g0795 | Cco-Chr1:8378250 | Cco09g2240 | Cco-Chr9:36699663 | 8.00E-28 | transposed | |
| Cco02g0264 | Cco-Chr2:2423519 | Cco09g2240 | Cco-Chr9:36699663 | 2.30E-13 | transposed | |
| Cco05g0021 | Cco-Chr5:242182 | Cco09g2240 | Cco-Chr9:36699663 | 5.80E-31 | transposed | |
| Cco06g0276 | Cco-Chr6:3020822 | Cco09g2240 | Cco-Chr9:36699663 | 1.00E-28 | transposed | |
| Cco10g1558 | Cco-Chr10:28781251 | Cco09g2240 | Cco-Chr9:36699663 | 2.20E-20 | transposed | |
| Cco10g2042 | Cco-Chr10:33797420 | Cco09g2240 | Cco-Chr9:36699663 | 7.50E-78 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g2240 | - | - | - | 0.0 |