Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2240 ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCCGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTTCATTAGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAAAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCGGCTGTTGCAGCCGCTCAGGCTGCGGTGGAGGTCGTTCGGCTCACTACCATCCCTCGGTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGTTATATGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGAGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACCGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGAAGACATTGCCAAAGCTTATGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCAACGAGCCAAAAAACGAGCCGAGCTCCGAGTCACCAATCACCGGCGACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCTGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGAGGTACCGGCGACACAGCATCGCTGGATCATCGGTGAGGGATGATGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCCACAGAAGCAGCCAGGGCTAGGTCCCGATTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGCGTTTCCAGAGAAGGGACCGGCGAGTATCGGCGCAAAGAAACGGCTGTCGTTCCCCGCCTCGCCGACGAATTCGAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGATCAAGAATGTTGCAGAGAGAGATTTTACCGGCGAGAGCAGATAG 1458 50.55 MGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPASLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAVEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIEDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAAFPEKGPASIGAKKRLSFPASPTNSRRHSGPPKIDASPIKNVAERDFTGESR 485
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 36699663 36702921 - CcPI632755_09g022400.1 Cco09g2240 188697
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2240 485 MobiDBLite consensus disorder prediction 324 351 - -
Cco09g2240 485 MobiDBLite consensus disorder prediction 395 411 - -
Cco09g2240 485 Coils Coil 177 197 - -
Cco09g2240 485 PANTHER IQ-DOMAIN 5-RELATED 6 439 - -
Cco09g2240 485 Gene3D iswi atpase 111 149 - -
Cco09g2240 485 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Cco09g2240 485 ProSiteProfiles IQ motif profile. 114 142 - -
Cco09g2240 485 MobiDBLite consensus disorder prediction 319 485 - -
Cco09g2240 485 MobiDBLite consensus disorder prediction 377 394 - -
Cco09g2240 485 MobiDBLite consensus disorder prediction 1 35 - -
Cco09g2240 485 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0040 Cco-Chr1:283504 Cco09g2240 Cco-Chr9:36699663 7.10E-24 dispersed
Cco03g1216 Cco-Chr3:23940354 Cco09g2240 Cco-Chr9:36699663 3.80E-33 dispersed
Cco04g1083 Cco-Chr4:26295756 Cco09g2240 Cco-Chr9:36699663 5.40E-104 dispersed
Cco04g2133 Cco-Chr4:35160524 Cco09g2240 Cco-Chr9:36699663 2.50E-33 dispersed
Cco05g1063 Cco-Chr5:9501604 Cco09g2240 Cco-Chr9:36699663 2.90E-22 dispersed
Cco05g2036 Cco-Chr5:29436599 Cco09g2240 Cco-Chr9:36699663 2.30E-29 dispersed
Cco05g2347 Cco-Chr5:31983545 Cco09g2240 Cco-Chr9:36699663 1.70E-109 dispersed
Cco06g0115 Cco-Chr6:1071576 Cco09g2240 Cco-Chr9:36699663 3.50E-26 dispersed
Cco06g0649 Cco-Chr6:7177405 Cco09g2240 Cco-Chr9:36699663 2.80E-17 dispersed
Cco07g1069 Cco-Chr7:24212594 Cco09g2240 Cco-Chr9:36699663 5.80E-25 dispersed
Cco07g1412 Cco-Chr7:28256124 Cco09g2240 Cco-Chr9:36699663 1.00E-09 dispersed
Cco07g1596 Cco-Chr7:29989998 Cco09g2240 Cco-Chr9:36699663 2.50E-22 dispersed
Cco09g0024 Cco-Chr9:209671 Cco09g2240 Cco-Chr9:36699663 1.20E-09 dispersed
Cco09g0069 Cco-Chr9:604269 Cco09g2240 Cco-Chr9:36699663 9.60E-22 dispersed
Cco01g0795 Cco-Chr1:8378250 Cco09g2240 Cco-Chr9:36699663 8.00E-28 transposed
Cco02g0264 Cco-Chr2:2423519 Cco09g2240 Cco-Chr9:36699663 2.30E-13 transposed
Cco05g0021 Cco-Chr5:242182 Cco09g2240 Cco-Chr9:36699663 5.80E-31 transposed
Cco06g0276 Cco-Chr6:3020822 Cco09g2240 Cco-Chr9:36699663 1.00E-28 transposed
Cco10g1558 Cco-Chr10:28781251 Cco09g2240 Cco-Chr9:36699663 2.20E-20 transposed
Cco10g2042 Cco-Chr10:33797420 Cco09g2240 Cco-Chr9:36699663 7.50E-78 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2240 - - - 0.0