Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2245 ATGGGTAAGGAAAAAATTCACATTAACATTGTGGTCATTGGTCATGTCGACTCTGGCAAGTCGACCACTACTGGCCATTTGATTTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCATTCAAGTATGCCTGGGTGTTGGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATTACAATTGATATTGCTCTGTGGAAGTTCGAGACCACCAAGTACTACTGCACTGTTATTGATGCTCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGCTGTTCTTATCATTGACTCCACTACTGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACCCGTGAACACGCCCTTCTTGCTTTTACTCTTGGTGTCAAGCAAATGATTTGCTGCTGCAACAAGATGGATGCTACCACTCCCAAGTACTCAAAATCTAGGTACGATGAAATCGTGAAGGAAGTTTCTTCTTACCTCAAGAAGGTTGGGTATAACCCAGACAAAATTCCCTTCGTCCCGATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCTACAAACCTCGACTGGTACAAGGGACCAACTCTTCTTGAGGCCCTTGACCTGATCCAAGAGCCTAAGAGACCATCAGACAAACCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGAGGTATTGGAACTGTTCCAGTGGGTCGTGTGGAAACTGGTATTATAAAGCCCGGTATGGTTGTCACCTTTGCCCCAACTGGACTGACTACTGAGGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAATGTGGGGTTCAACGTGAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTACGTTGCCTCAAATTCCAAGGACGACCCTGCTAAGGAAGCTGCCAATTTCACTTCCCAAGTTATTATCATGAACCATCCAGGGCAGATTGGAAATGGCTATGCTCCTGTCCTCGACTGCCACACCTCTCACATTGCAGTCAAATTTGCCGAGATTTTAACCAAGATTGACAGGCGATCTGGAAAAGAACTCGAGAAAGAGCCCAAGTTCTTGAAAAACGGTGATGCTGGATTTGTTAAGATGATCCCCACCAAGCCCATGGTGGTGGAAACATTCTCCGAGTATCCTCCACTTGGACGATTTGCTGTGAGGGACATGCGTCAAACTGTGGCTGTTGGCGTCATCAAGGCTGTTGAGAAGAAGGATCCATCCGGTGCCAAGGTCACAAAATCTGCTGCTAAGAAATCGGGCAAGTGA 1350 46.81 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGAKVTKSAAKKSGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36736683 36738193 + CcPI632755_09g022450.1 Cco09g2245 188702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2245 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Cco09g2245 449 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Cco09g2245 449 FunFam Elongation factor 1-alpha 323 430 - -
Cco09g2245 449 CDD EF1_alpha 9 227 - -
Cco09g2245 449 Gene3D - 1 226 IPR027417 -
Cco09g2245 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Cco09g2245 449 FunFam Elongation factor 1-alpha 229 316 - -
Cco09g2245 449 Pfam GTP-eEF1A C-terminal domain-like 327 427 IPR054696 -
Cco09g2245 449 CDD EF1_alpha_II 230 320 - -
Cco09g2245 449 Pfam Elongation factor Tu GTP binding domain 6 221 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g2245 449 CDD EF1_alpha_III 323 426 - -
Cco09g2245 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g2245 449 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Cco09g2245 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Cco09g2245 449 PANTHER TRANSLATION FACTOR 4 427 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Cco09g2245 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525(InterPro)
Cco09g2245 449 FunFam Elongation factor 1-alpha 1 226 - -
Cco09g2245 449 Gene3D Translation factors 323 430 - -
Cco09g2245 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Cco09g2245 449 Gene3D Translation factors 229 316 - -
Cco09g2245 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g2245 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g2245 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g2245 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco09g2245 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1666 Cco-Chr1:29417113 Cco09g2245 Cco-Chr9:36736683 6.70E-76 dispersed
Cco02g2247 Cco-Chr2:35049062 Cco09g2245 Cco-Chr9:36736683 4.70E-256 dispersed
Cco05g1984 Cco-Chr5:28935916 Cco09g2245 Cco-Chr9:36736683 1.70E-75 dispersed
Cco06g0832 Cco-Chr6:10018580 Cco09g2245 Cco-Chr9:36736683 9.20E-227 dispersed
Cco09g2244 Cco-Chr9:36730831 Cco09g2245 Cco-Chr9:36736683 2.10E-259 tandem
Cco09g2245 Cco-Chr9:36736683 Cco09g2246 Cco-Chr9:36742985 4.40E-262 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2245 K03231 - csv:101220517 892.493