Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2253 TCATCTTGTAAGGATGAGGATACTGAAAAAGTCTACAGTTGTATTGATCTTTATTTTGTAACACAGGATGGCAGCAGTTTCAAATCGAAATATAAGTTTCGTCCTTATTTTTATGCAGCCACAAAGGATAAAATGGAAACTGATGTGGAGGATTGTTTGAGACGACGTTATAAAGGTCAAATAGCTGATATTGAGATTTTAGAAAAAGAGGACCTTGATCTTTCGAATCATTTGTCGGGATTGCACAAGGCATATTTAAAGCTATCCTTTGACGCTGTTCAAGAATTGATGAATGTAAAGAGTGAATTATTGCATGTTGTTGAAAGCAATAGGGAGAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAGAGGTCTCAAGATTTTCTAGAATGTATTGTTGATCTTCGAGAGTACGATGTTCCTTACCACGTTCGCTTTGCTATTGATCACGATTTGCGGTGTGGACAGTGGTATGATGTCAGTGTATCAAGCACTGGTATTACTCTTGAGAAGAGAAATGATCTCCTGCAACGTGCTGAAGTTCGGATATGTGCATTCGATCTTGAGACCACAAAACTACCCCTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAATACACTCCAAAACCAGAATATGAAGGGTTCTTCAAAGTGAGCAATGTGAAAAATGAGTTAGAGCTTCTCAAACTTTGGTTTGCCCATATGCGAGAGCTGAAACCTGGTATCTACGTCACCTATAACGGTGACTATTTTGACTGGCCATTTCTTGAAAGCAGAACAGCAAATCATGGGCTTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGAGAATGTCGTTCTAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAAGGTAGCCATGGTTTGAAGGCTGTCACAAAAGCGAAACTGGGGTACGATCCTCTTGAAGTGAATCCAGAGGATATGGTGCGGTTTGCAAAGGAAAAACCTCAGATGATGGCTTCCTATTCCGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATCATTCCAATGTCACCCGATGAGGTGTTGCGCAAAGGAAGTGGGACGCTTTGTGAAATGCTTTTAATGGTTCAGGCTTACAAGGCTAATGTCGTGTGTCCTAACAAACATCAATCAGATCCAGAAAAGTTCCATAACAATCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCTGACCTTCCTACCAGTTTTAGACTTGATTCATCTGCTTATGATCAATTGATAAACAATCTAGATCGAGATTTGCAGTATGCCATTCAAGTAGAAGGAAAAATGGACTTGGAATCGGTGTCAAACTATAGTGATGTGAAGAATGCTATTATGGAAAAGCTTATTCGATTGCGGGATGAGCCTATGCGTGAAGAGTGCCCTCTGATCTATCACCTTGATGTAGCTGCAATGTATCCTAACATCATTTTAACAAATAGGCTTCAGCCGCCATCAGTAGTAACAGATGAGGTTTGCACTGCTTGTGATTTCAACCGTCCTGGAAAAACTTGTCTACGAAAACTTAAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAGAAGCGACTATTATCATCTGAAGAGGCAAATTGAGTCTGAGTTTGTCGATAGTGGTAATGTTCGAGTGTCAAAACAATTTCTTGAACTTCCGAAGTTGGAGCAACAAGCAAAACTGAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCTTACAAACGGGTACTTGATCCAGTCACTGAAGTTCAAGAAGCAGGGATCTGTATGAGGGAAAACTCCTTCTATATCGACACTGTTCGTAGTTTTCGAGATAGAAGATATGAATACAAAGGGCTCAATAAAGTTTGGAAAGGGAAACTATCAGAAGCTAAAGCAAGTGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTGGTTCTGTATGATTCTTTACAACTTGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGTTGGTATTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCACCTGCTAATTAAGAAAATTGGAAAACCACTAGAGTTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCATTCCCGGAGAACTTTACCTTTGAAACAAAAGACTTGAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAAGAACAACACAAATGATCAGTACCAAACACTTGTAGATCCTGTGAGGAAAATATATGAAACGCGAAGCGAATGCTCAATTGAATTTGAAGTCGATGGACCGTACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATGATGATGGAACCCTTGCAGAGCTGAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAGCTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTTGATCTTCTAGATAGTCAAGGAAAAGATATTGCAGATAGTGAGTTGCTTGATTATATATCTGAATCTAGTACCATGAGCAAGTCTTTGGCAGACTATGGAGAGCAAAAGTCTTGTGCTGTTACCACTGCAAAACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTTCGATGTCAATACATAGTTGCATGCGAACCCAAGGGAACACCTGTAAGTGAGCGCGCTGTTCCTGTTGCTATATTTGAGACTGATCAAGAGATAATGAAATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGTTGGCATTCGATCCATCATCGACTGGTCCTACTACAAACAACGCCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAAAAGGTTTCAAATCCTGTCCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTCCGTGAGAAGGATGATAAATTTTGCCAACCGAAAATAGTCGATATGTTTGCCTCAAGCAGAGGTAAATATTCAGAAAACAATGGTGGTGCTAGCAGCAGCAAACATGTGATGAACAGTGAAAATTCTGATGATATAGAAGACTTTCAAAAGAAAACTAGTGCTACAAATGGCCCCAAACCAGTTGTTCGAAGTTACAATGTTACAGCCATGAAACATTCAGTTACAAAAGATAGCCAAGTAGATTCCATGATGCAAGAAAAGTGTAAGGGTGTAGGATGCGATCCTTCTTCACCATTACATTTCAAAGACATTGATAGAAATGTGGATTACCACGGATGGCTTGAAATGAAGAAACGAAAGTGGAGGAATATTTTGGACAAGAGGAAGAAACAAAGATTGGTAGATTTGAGGACTCCACTTCCTGCTAACGGTGTTCCATTGGAGTTGAATTACACTATGAACAATAAAGAGGCTCTTGGAATAACAGGCGTTGGTTTGTATTTTAAGAGGCACGAAAAATCTATAACACATTGTCATTGGCAGATTTTACAGCTTGTTCATAGTTCACAGAGTGGCCAATATTTTGCTTGGGCTGTTGTTGAAGGAGTTATGCTAAAGATTCCTATTACTGTTCCTAGAGTATTTTACATCAATTCTAAATTACCCATTACAGAAGGATTTGTTGGTAGGCGTGTTAACAAAACCCTTCCGCATGGAACGCACATCTATAACCTGTATGAGGTTGTGACTGATGAAGGTGAATTTAGGACACAGAGTAATAAACTTGCTGCCCTCCTTGCAGATCCAGAAGTTGAGGGCATCTATGAAAGCAAGGTATCATTGGAGTTCAAGTCCATCCTCCAGATTGGTTGTGTCTGTAAAGTTGATAAAACTGCTAAAAAACGAAACATTCAAGACGGGTGGAGTCTGGATGAACTGCAAATGAAAACTACAACAGAATGCAGTTATCTCGAAAAGTTAACCTCTTTCTTCTATGTGTATAATAGCATTTCTGAAGGAGGAGATATCTACATTACCTATTTTCCTGCCACAAAATTCATACTTGTGGTGGTGGTTACTTCTTACCGAAACAAAGACTTGTCATCAAACTTTCTCGAAAGGAAATTTTGTGAAGCTTGTCAAATGCTCTCTGGTCAATCACAACCCCCTAAGAGTGGTATAGCTTACAAGGTTGACTATGTTGTAAACATCAAAGAAGCTGAAGTGATTTTGCAAAAGTCAATAACAGAATACAGGAGCACAAACCTTGGACCTACTGTTGCTATAATTGAGTCCCCAAATGTGCAGCTTCTGAAGTCAGTTGTGAAAATATTAGACGATTTTCCATGCTTGAACATCCCTTATGATGCTCATCATAGTCAATATCAGTTTCTTGGTTGGCAACAAAAAGCTGCTGAGATTGGAATGCGACAGTGTGCTAATTCATCCCGATGGTTGAATAATAGAATCTCTCTTGCAAGATATGCCCATGTACCTTTGGGAAATATTGAACCTGATTGGAAAATTTTTACAGCAGATATTTTCTTTTCAAGGGCATTACATGATCAACAACAGGTCCTTTGGATATCAGATGACGGTGTTCCAGATATAGGAGGCAATAATTTCGAAGACGTTTGTTTAGTCGATGAGGTTCAACAGCCTATCCGGAATTGCTCTGGTGCATACAGAAAATTTTCTGTGGAGCTAAAGATCCATCATTTGGCTGTGAATGCGCTGCTGAAGAGCAACCAAGTGAATGAAATGGAAGGAGGTGGCTTTGATGAGGCTGAATCATATGCCCCAGCATTTCCTGTCCTGAAACAATTGATTCAAAGATGTCTTGCAGATGTAGCTACATCTGGAAATGTTTATGCTGATGAAATTTTGTTGCATCTGTACCGTTGGATTTGCAGCCCCCAATCAAGGCTTCATGACCCAGCTCTTCATCGCTTGCTTCACAAGGCAATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGCACTACGCAAATTAGGTGCCACCATTATTTTTGCAAACTTCTCAAAAGTTGTCATAGACACGGGAAAGTCTGATCTTTCTGCTGCTAAGGCATACTGTGATAGCTTGCTGAAAACACTGCAAACAAGGGACCTGTTTGAGTGGATTGAGCTGATACCAGTACAGTTCTGGCACTCCCTGTTATTTATGGATCAGTACAATTATGGTGGAATTTCAGCAAAAGATAATGAAATTACAGATGCTAAATCCCAAGTTAAAATATTGTCCAACTGGAAGATTGCTGAATATCTACCTAAGAAGATTCAGGATTGTTTTATTACGATCATTTCTCAATTTATATACATTCCATGGATATTTGCAACCAAACAAGCTGTTGCAAGAGTGTCGTTGCAGCAGGCCGACACGTGTACCCCATCTTTTGAATCACAAGTGACAGAACATCTCAAAGAGCAGTTGAGTTCTTACTTCAGCAACCATCTGTTTGGGATTGTTGATGATATTTTACATAAACAACCTTCTGATAGTGTCCATAAAGAAGATGCTGCATTGAAATTCATTAATTACGTTTGTGCTGCTTTGGAACTTGACCAAAATGTTCGGGATGATGTTCGGAAAATGAAGAAGAATTTACTGAAGTATATGCACGTGAAAGAGTTTGCACCAGAAGCTCAGTTTTCTTATCCATGCACTTCCTTCATCTTACCCAATGTCTTTTGCAGCTATTGCAATGATTGTAGAGATTTGGACTTGTGCCGTGACTCAGATTTACAAGCACAAGAATGGCGGTGTGGTGTGGCAGAATGTGGACAACCATATAACCAAGAATTGATTGAGAATGCTCTTATTCAAATTGTGATGCAAAGAGAGCGTGCATATCACGTGCAGGATTTGGTTTGTGGTAGGTGCAAACAGGTCAAAGCTGCTCATTTGTGGGAACAATGTGCCTGTGCTGGCACATTTCAATGCAAAGAAGATGCCAAGGAGTTTTTGAGCAGCATGAGGATTCTCTTGGAGTATGCGGACGTGGAACTGAGTGGGGATGGGACACATGCAAGGGGTGCTCGGAGTGTACCGGTGGCCATGGGGCGTGCATGGGAGACCAGCTGTGCGTGTTGGGTGTGA 6372 40.16 SSCKDEDTEKVYSCIDLYFVTQDGSSFKSKYKFRPYFYAATKDKMETDVEDCLRRRYKGQIADIEILEKEDLDLSNHLSGLHKAYLKLSFDAVQELMNVKSELLHVVESNREKSDAAEAYDSILFGKREQRSQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTGITLEKRNDLLQRAEVRICAFDLETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFKVSNVKNELELLKLWFAHMRELKPGIYVTYNGDYFDWPFLESRTANHGLKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVVCPNKHQSDPEKFHNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDSSAYDQLINNLDRDLQYAIQVEGKMDLESVSNYSDVKNAIMEKLIRLRDEPMREECPLIYHLDVAAMYPNIILTNRLQPPSVVTDEVCTACDFNRPGKTCLRKLKWVWRGEVFMAKRSDYYHLKRQIESEFVDSGNVRVSKQFLELPKLEQQAKLKERLKKYCQKAYKRVLDPVTEVQEAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNAHLLIKKIGKPLELDTDGIWCALPGSFPENFTFETKDLKKLTISYPCVMLNVDVAKNNTNDQYQTLVDPVRKIYETRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDSQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDQEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLHKKVREKDDKFCQPKIVDMFASSRGKYSENNGGASSSKHVMNSENSDDIEDFQKKTSATNGPKPVVRSYNVTAMKHSVTKDSQVDSMMQEKCKGVGCDPSSPLHFKDIDRNVDYHGWLEMKKRKWRNILDKRKKQRLVDLRTPLPANGVPLELNYTMNNKEALGITGVGLYFKRHEKSITHCHWQILQLVHSSQSGQYFAWAVVEGVMLKIPITVPRVFYINSKLPITEGFVGRRVNKTLPHGTHIYNLYEVVTDEGEFRTQSNKLAALLADPEVEGIYESKVSLEFKSILQIGCVCKVDKTAKKRNIQDGWSLDELQMKTTTECSYLEKLTSFFYVYNSISEGGDIYITYFPATKFILVVVVTSYRNKDLSSNFLERKFCEACQMLSGQSQPPKSGIAYKVDYVVNIKEAEVILQKSITEYRSTNLGPTVAIIESPNVQLLKSVVKILDDFPCLNIPYDAHHSQYQFLGWQQKAAEIGMRQCANSSRWLNNRISLARYAHVPLGNIEPDWKIFTADIFFSRALHDQQQVLWISDDGVPDIGGNNFEDVCLVDEVQQPIRNCSGAYRKFSVELKIHHLAVNALLKSNQVNEMEGGGFDEAESYAPAFPVLKQLIQRCLADVATSGNVYADEILLHLYRWICSPQSRLHDPALHRLLHKAMQKVFALLLAALRKLGATIIFANFSKVVIDTGKSDLSAAKAYCDSLLKTLQTRDLFEWIELIPVQFWHSLLFMDQYNYGGISAKDNEITDAKSQVKILSNWKIAEYLPKKIQDCFITIISQFIYIPWIFATKQAVARVSLQQADTCTPSFESQVTEHLKEQLSSYFSNHLFGIVDDILHKQPSDSVHKEDAALKFINYVCAALELDQNVRDDVRKMKKNLLKYMHVKEFAPEAQFSYPCTSFILPNVFCSYCNDCRDLDLCRDSDLQAQEWRCGVAECGQPYNQELIENALIQIVMQRERAYHVQDLVCGRCKQVKAAHLWEQCACAGTFQCKEDAKEFLSSMRILLEYADVELSGDGTHARGARSVPVAMGRAWETSCACWV 2123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36798943 36819195 - CcPI632755_09g022530.1 Cco09g2253 188710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2253 2123 Pfam DNA polymerase family B, exonuclease domain 141 347 IPR006133 -
Cco09g2253 2123 MobiDBLite consensus disorder prediction 1106 1123 - -
Cco09g2253 2123 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 2 2079 IPR029703 GO:0000278(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(InterPro)|GO:0008622(PANTHER)|GO:0045004(PANTHER)
Cco09g2253 2123 CDD DNA_polB_epsilon_exo 187 391 - -
Cco09g2253 2123 Pfam Zinc finger domain of DNA polymerase-epsilon 2044 2090 IPR054475 -
Cco09g2253 2123 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 891 1066 - -
Cco09g2253 2123 SUPERFAMILY DNA/RNA polymerases 433 1060 IPR043502 -
Cco09g2253 2123 SUPERFAMILY Ribonuclease H-like 6 414 IPR012337 -
Cco09g2253 2123 CDD POLBc_epsilon 450 1067 - -
Cco09g2253 2123 Gene3D - 185 415 IPR036397 GO:0003676(InterPro)
Cco09g2253 2123 Gene3D - 886 1070 IPR042087 -
Cco09g2253 2123 FunFam DNA polymerase epsilon catalytic subunit 3 174 - -
Cco09g2253 2123 FunFam DNA polymerase epsilon catalytic subunit 886 1070 - -
Cco09g2253 2123 Gene3D Palm domain of DNA polymerase 531 882 IPR023211 -
Cco09g2253 2123 FunFam DNA polymerase epsilon catalytic subunit 187 415 - -
Cco09g2253 2123 Pfam Domain of unknown function (DUF1744) 1472 1821 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Cco09g2253 2123 Gene3D DNA Polymerase, chain B, domain 1 4 181 - -
Cco09g2253 2123 SMART polmehr3 186 788 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cco09g2253 2123 MobiDBLite consensus disorder prediction 1106 1125 - -
Cco09g2253 2123 FunFam DNA polymerase epsilon catalytic subunit 702 882 - -
Cco09g2253 2123 SMART DUF1744_2 1456 1821 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2358 Cco-Chr2:35984404 Cco09g2253 Cco-Chr9:36798943 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2253 K02324 - csv:101208568 3551.91