Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2259 ATGGCTTCCAACACTTTGATGAGCTGTGGCATTGCCACCACCGCCTTCCCTTCAGTCCTTTCCTCCTCTAAGTCTAAATTCGCCGCCGCCGTCCCGATTTCTGGCGTCGCCGTCAATGCATCATCCCGATTTTCCATGTCCGCCGAGTGGATGCCCGGCCAGCCCCGCCCTCCCTACCTCGACGGCTCCGCCCCCGGTGATTTTGGGTTCGACCCTCTTCGGCTGGGAGAAGTGCCGGAGAACCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCTGAGGCTTTGGGATTGGGCAACTGGGTGAAAGCTCAAGAATGGGCAGCAATTCCAGGAGGCCAAGCTACGTACTTGGGACAACCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACCCTGAGAAGAAGAAGTACCCAGGAGGTGCTTTTGACCCATTAGGCTACTCAAGAGACCCTGAAAAGTTGAAGGAATACAAAGTCAAAGAGATCAAAAACGGTCGGTTGGCGCTATTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCACTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGCGATATTATCATCCCCAGATCGATTTCGCCTTGA 741 53.17 MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSRDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36869967 36871569 + CcPI632755_09g022590.1 Cco09g2259 188716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2259 246 Gene3D Chlorophyll a/b binding protein domain 51 237 - -
Cco09g2259 246 Pfam Chlorophyll A-B binding protein 57 211 IPR022796 -
Cco09g2259 246 SUPERFAMILY Chlorophyll a-b binding protein 40 240 - -
Cco09g2259 246 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 235 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cco09g2259 246 FunFam Chlorophyll a-b binding protein, chloroplastic 51 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2259 Cco-Chr9:36869967 Cco10g2187 Cco-Chr10:34972337 6.20E-40 dispersed
Cco09g2259 Cco-Chr9:36869967 Cco06g1814 Cco-Chr6:28499730 1.10E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2259 K08907 - csv:101211428 498.434