Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2260 ATGTCTTCATCGCTCTGTTCCTCAATTCGGCCATTGCCACCGCACTACTGGCGGCGGAAGAACGTCAGATTCTTCCTATTGCTTCAATCAAACAGAGGCATTTGCTTCGCACCTCGCTTCGTTGCTTGCTCGAACAACGACGACTCTGTTGCAATACCCAGACCTACGCCGCTGGCTTTCGATCCTGCGGAGGATCTGTACGGACTTGGCATCGATTTAAAACCTAGGTATGTAGCTTCTAGGGCACCTGAACCCAGGTCCTGGTTTGGCCCAAATGGTCAGTATATTAAAGAGTTACCATGTCCAAGTTGCCGAGGTAGGGGCTATGCGCCGTGTACGGAATGTGGAATTGAAAGATCCCGTGCTGATTGTTCCGTGTGTGATGGAAAGGGTATAGTGACCTGCCACCAATGTCTGGGGGATCGTGTCATATGGGAAGAGTCTATTGATGAACGACCATGGGAGAAAGCACGCTCCACTTCTCCATTAAGAATGAAGGAAGATGATGAAGTCGATAACTTGGAAATAAAGCTGGAAGAAAAGAAGAAATCAAAGCGTGTTTACCAATCCCCTCCTCCTGAAGTGGGTTTAAAGATCAGTCGATCATTAAAAAGTCTCAATGCCAAAACAGGTATATTTAGTAAGAGAATGAAGATTATCCATCGTGACCCTGCTCTTCATGCCCAGAGAGTGGCTGCAATTAAGAAAGCTAAAGGAAGTGCTGAAGCAAGAAAACGTACTTCTGAAGCTTTGAAAGCATTCTTTAACGATCCAGAAAATCGTCGAAAGCGGAGCATTGCAATGAAAGGAGTAAAATTTTACTGCAAAAACTGCGGCCGTGAAGGACATCGAAGACACTATTGTCCAGAACTTAAGGAAGCAATTGATAGGCGATTCAGATGTCGAGTATGTGGAGAGAAGGGCCATAACCGGAGGACTTGTGAGAAGTCTAGGTCGAATAGTATACCGATGACCGCAACAATTCAGCGCCATTGCGGGATATGCGGTGTGAAGGGCCACAACAGGAGGAACTGTCAGAAGTCCAAGTTGAGCAATCCAACTAACCTACGAATAAATTATGCGCATCGTCGGAGCAGTCGCAATGTGTTGAGGCTGAATTTGATCAGTGAAAATAGCAGAGTGAGGCAGTATCATTGTAGGATCTGCAATAAAAACGGTCACAGTCAGCAGAACTGTCCCAATATTGATAGGAAAGGTAACGGTCTGACTACTAGAAGATCATACAGCTGCAAACTATGCCATGAAAAAGGGCATAATATTAGGACATGCCCAAATAGAAATATGAACAATCTACAGAAAAATTCTCCTGTTGCTTTAAACCAATAA 1347 44.84 MSSSLCSSIRPLPPHYWRRKNVRFFLLLQSNRGICFAPRFVACSNNDDSVAIPRPTPLAFDPAEDLYGLGIDLKPRYVASRAPEPRSWFGPNGQYIKELPCPSCRGRGYAPCTECGIERSRADCSVCDGKGIVTCHQCLGDRVIWEESIDERPWEKARSTSPLRMKEDDEVDNLEIKLEEKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGIFSKRMKIIHRDPALHAQRVAAIKKAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEAIDRRFRCRVCGEKGHNRRTCEKSRSNSIPMTATIQRHCGICGVKGHNRRNCQKSKLSNPTNLRINYAHRRSSRNVLRLNLISENSRVRQYHCRICNKNGHSQQNCPNIDRKGNGLTTRRSYSCKLCHEKGHNIRTCPNRNMNNLQKNSPVALNQ 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36874879 36883315 + CcPI632755_09g022600.1 Cco09g2260 188717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2260 448 ProSiteProfiles Zinc finger CCHC-type profile. 386 401 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco09g2260 448 SUPERFAMILY Retrovirus zinc finger-like domains 272 318 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco09g2260 448 Gene3D - 272 325 - -
Cco09g2260 448 Gene3D - 381 443 - -
Cco09g2260 448 Pfam Zinc knuckle 413 432 IPR025829 -
Cco09g2260 448 ProSiteProfiles Zinc finger CCHC-type profile. 275 290 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco09g2260 448 Coils Coil 164 184 - -
Cco09g2260 448 SUPERFAMILY Retrovirus zinc finger-like domains 378 434 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco09g2260 448 SMART c2hcfinal6 331 347 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco09g2260 448 SMART c2hcfinal6 274 290 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco09g2260 448 SMART c2hcfinal6 300 316 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco09g2260 448 SMART c2hcfinal6 416 432 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco09g2260 448 SMART c2hcfinal6 385 401 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco09g2260 448 ProSiteProfiles Zinc finger CCHC-type profile. 300 316 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco09g2260 448 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 93 351 IPR051714 GO:0003727(PANTHER)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0045182(PANTHER)|GO:2000767(PANTHER)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2260 - - - 0.0