Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2265 ATGTCGTTCTCTTCTCCCTCCGACTCCTTCATTGACTCTCACTTACTCTGTGACGAGGACTCCTCCGGTATTTTGTCCGGAGAGTCGCCGGAGTACTCCTCTGACCTTGAATCGCCGGCCAGCAGTGAGGATTCTATCGCTACTTTCATAGAGGACGAGAGACACTTCGTTCCTGGAATTGATTACTTGTCGCGCTTTCAGTCTCAATCGCTCGATTCTTCCGCAAGAGCCGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTTCTTTCAGTGGCTTGTTTATCACTTGCAGCTAAAATGGAGGAACCCATTGTTCCTTCATTCGTGGATCTGCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTCCGATCCGTAACACCTTTCAGCTTTATCGGATTCTTCGCCTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACGGAAATTATTCTCTCCAATATTCGAGACGCTACCTTTCTTGAGTACTGGCCTTCTTGCATTGCTGCCGCTGCCTTACTCTGTGCGGCAAATGAAATACCCAATTTGACCCTCTTGGATCCTGAACAAGCCGAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATTGTCGGGTGTTATCGGCTAATGCAACCGTTAACAGCGGAGAGTCATCGGAGGAAGCCGCCGAAAGTGATACCACAGCTCCGAGTCAGAATCCGAGCCGGGTTGAGATATAGTGACTCGTCATCCTCCTCCTCCTCATCAAGGTTACCTTTTAAAAGAAGGAAGTTAAATAATTGCTTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGACGAATAA 1008 46.53 MSFSSPSDSFIDSHLLCDEDSSGILSGESPEYSSDLESPASSEDSIATFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPIVPSFVDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNIRDATFLEYWPSCIAAAALLCAANEIPNLTLLDPEQAESWCNGLSKDKIVGCYRLMQPLTAESHRRKPPKVIPQLRVRIRAGLRYSDSSSSSSSSRLPFKRRKLNNCLWVEDDKENSKFRADE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36928527 36930590 - CcPI632755_09g022650.1 Cco09g2265 188722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2265 335 SMART cyclin_7 81 169 IPR013763 -
Cco09g2265 335 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
Cco09g2265 335 PANTHER CYCLINS 35 272 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco09g2265 335 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
Cco09g2265 335 Pfam Cyclin, C-terminal domain 178 279 IPR004367 -
Cco09g2265 335 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
Cco09g2265 335 SUPERFAMILY Cyclin-like 160 277 IPR036915 -
Cco09g2265 335 Pfam Cyclin, N-terminal domain 45 176 IPR006671 -
Cco09g2265 335 ProSitePatterns Cyclins signature. 76 107 IPR048258 -
Cco09g2265 335 Gene3D - 59 176 - -
Cco09g2265 335 SMART Cyclin_C_2 178 311 IPR004367 -
Cco09g2265 335 FunFam D2/4-type cyclin 59 176 - -
Cco09g2265 335 Gene3D - 49 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1238 Cco-Chr2:23511289 Cco09g2265 Cco-Chr9:36928527 5.70E-30 dispersed
Cco05g2768 Cco-Chr5:35521311 Cco09g2265 Cco-Chr9:36928527 3.40E-125 dispersed
Cco08g1802 Cco-Chr8:29125670 Cco09g2265 Cco-Chr9:36928527 1.40E-32 dispersed
Cco09g2265 Cco-Chr9:36928527 Cco10g0985 Cco-Chr10:21305569 1.40E-50 dispersed
Cco09g2265 Cco-Chr9:36928527 Cco04g1608 Cco-Chr4:31411913 8.40E-48 transposed
Cco09g2265 Cco-Chr9:36928527 Cco08g1306 Cco-Chr8:24875559 8.40E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2265 K18810 - csv:101210686 617.846