Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2285 ATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGGGTTTGTGGCCATTATCACAAATACGAAGAAGGGGAAGTTTGTGGGATTTGTGGTCATCGGGTTCCAGCTACATCGGAGAAAACTTCGTTGCAAGTTAGTGCGTTTCCTTCTGAGATCTTGCCGGAGTTTCTTTATTTGGGAAGTTATGATAACGCTTCACGCTCTGAACTTTTGAAGACTCAAGGAATCTCCCGTGTTCTTAACACTGTGCCGGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATATGATAAGACTTTACCTTTCGATGACGCGGTTGAATTTCTAGAGCTATGTGAAAGAGACAAGGCTCGGGTTCTGGTGCACTGCATGTCAGGAAAAAATAGGTCTCCAGCTATTGTTATAGCGTTTTTGATGAAATGTAAAGGTTGGAGACTTGCTCAGAGTTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGACTTAACTGAATCTGTCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATTAGCAGAAAACTCCCTCCCAACCCTGCCAATCTTCCCTCCTGTTGGTCCGCCGTCTTTTAGCTTTGGCTTCCCAAAGACTGGCGACCCAGTTCCTACAATTCCATTCAACAGCATTGGTGCAACATCGATCTTTTCCCGCCCGACCATGGACGTACCTTCCCACGAGTTTACATTCGGTGCTGGCCAAACTCAAAACGGTTTCTCCGCTAGCCCCTTTGGCACGAATCCACGGAACTCAACCAGCAGCAACATCCAAATGGACAGTGCTTAA 819 46.4 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPATSEKTSLQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKTLPFDDAVEFLELCERDKARVLVHCMSGKNRSPAIVIAFLMKCKGWRLAQSYQWVKERRPSVDLTESVYQQLQEYEQKVFGLAENSLPTLPIFPPVGPPSFSFGFPKTGDPVPTIPFNSIGATSIFSRPTMDVPSHEFTFGAGQTQNGFSASPFGTNPRNSTSSNIQMDSA 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37077008 37079556 + CcPI632755_09g022850.1 Cco09g2285 188742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2285 272 Gene3D Protein tyrosine phosphatase superfamily 30 182 IPR029021 -
Cco09g2285 272 Pfam Dual specificity phosphatase, catalytic domain 55 179 IPR000340 GO:0016311(InterPro)
Cco09g2285 272 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311(InterPro)
Cco09g2285 272 FunFam Protein-tyrosine-phosphatase IBR5 36 186 - -
Cco09g2285 272 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 181 IPR029021 -
Cco09g2285 272 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311(InterPro)
Cco09g2285 272 MobiDBLite consensus disorder prediction 240 272 - -
Cco09g2285 272 SMART dsp_5 46 179 IPR020422 GO:0006470(InterPro)
Cco09g2285 272 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 271 IPR044212 GO:0005634(PANTHER)|GO:0009734(InterPro)|GO:0009738(InterPro)|GO:0033549(InterPro)|GO:0033549(PANTHER)|GO:0043407(InterPro)
Cco09g2285 272 CDD DSP_plant_IBR5-like 47 176 - -
Cco09g2285 272 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470(InterPro)
Cco09g2285 272 MobiDBLite consensus disorder prediction 237 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2285 K04459 - - csv:101211000 516.153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g1461 . 77 650 Protein tyrosine phosphatase (PTP) family AT3G50110 62.0 1.3e-190 663.3
Cco02g0686 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 57.9 1.9e-178 622.9
Cco10g1533 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 1.4e-153 539.7
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.5 2.6e-300 1028.1
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.2 5.7e-287 983.8
Cco06g1422 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 54.7 0.0e+00 1090.9
Cco06g1795 . 25 444 Protein tyrosine phosphatase (PTP) family AT5G58160 64.4 2.2e-141 500.7
Cco09g1035 . 88 392 Protein tyrosine phosphatase (PTP) family AT1G71860 68.0 6.2e-123 437.6
Cco06g2033 . 170 1067 Protein tyrosine phosphatase (PTP) family AT5G23720 65.5 0.0e+00 1099.3
Cco06g0595 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-42 169.9
Cco09g2285 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cco05g2408 . 139 383 Protein tyrosine phosphatase (PTP) family AT3G52180 73.9 3.3e-109 391.7
Cco07g0514 . 10 269 Protein tyrosine phosphatase (PTP) family AT3G10940 66.5 5.7e-98 354.4
Cco10g1406 . 143 582 Protein tyrosine phosphatase (PTP) family AT3G01510 72.3 5.9e-198 687.2
Cco02g1936 . 96 297 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 1.5e-73 273.1
Cco09g1122 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cco03g1073 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.3e-55 210.7
Cco10g0247 . 71 403 Protein tyrosine phosphatase (PTP) family AT2G35680 55.5 6.6e-101 364.4
Cco11g0221 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Cco11g0221 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.7e-45 179.5
Cco10g0247 . 107 282 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.0e-43 171.0
Cco02g1936 . 130 298 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.9e-76 282.3
Cco09g1122 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 2.1e-70 262.3
Cco03g1073 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cco03g1073 . 7 195 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 4.0e-77 284.6
Cco02g1936 . 121 293 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cco07g0302 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.4e-63 239.2
Cco10g1533 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 1.4e-153 539.7
Cco02g0686 . 33 611 Protein tyrosine phosphatase (PTP) family AT3G19420 66.5 2.0e-220 762.3
Cco04g1461 . 75 650 Protein tyrosine phosphatase (PTP) family AT3G19420 60.9 1.2e-198 689.9
Cco04g1461 . 77 650 Protein tyrosine phosphatase (PTP) family AT3G50110 62.0 1.3e-190 663.3
Cco02g0686 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 57.9 1.9e-178 622.9
Cco06g1422 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 54.7 0.0e+00 1090.9
Cco06g1795 . 25 444 Protein tyrosine phosphatase (PTP) family AT5G58160 64.4 2.2e-141 500.7
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.5 2.6e-300 1028.1
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.2 5.7e-287 983.8
Cco02g2353 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 4.0e-69 258.5
Cco10g0185 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.0 9.2e-110 393.7
Cco04g0913 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.2 3.0e-286 981.1
Cco04g0913 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 4.4e-258 887.5
Cco04g0913 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.0e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006354 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 38