Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2294 ATGGGAGTTTTCGAAACGGTGAAAAACATCGGCAGCGATCACGCCCCGGTCGTCCCCTTGGCGTTGTTCGTCACCGTTCTCTGTTTCTCTTTGGTTATCGGCCACTTGCTTGAAGAAAATCGATGGGTTAATGAATCCATCACCGCCATTATCATTGGAGTTGTCACTGGAACGATCATATTGGTCTGTAGCAAGGGGAAAAATTCTCATATCCTAACTTTTAATGAAGAAGTGTTCTTCATGTATCTTCTTCCACCAATAATCTTCAATGCGGGATTTCAAGTTAAAAAGAAGCAGTTCTTTCATAATTTCTTGACCATCATGCTGTTTGGTGTGGTTGGTGTTTTCATATCTGCACTTATTATAACGGCTGGCAGCCAGTGGCTGTTTCCAAGAATGGGCTTTCATGGTCTGTCGGCGCGGGACTATGTTGCTATAGGCGCTATCTTTTCATCCACGGACACAGTATGCACCCTGCAGGTACTACACCAAGAGGAAACACCTTTACTCTACAGCCTAGTCTTTGGGGAAGGAGTGGTGAACGATGCAACATCAGTTGTTCTCTTCAATGCAGTCCAGAAGATTGATATCACTAGGCTTAACAAGAAGACAGCCCTTCATCTTTTGGGAGATTTTTGTTACTTATTTTCAACTAGCACTGTCCTTGGAGTGACTACTGGGCTTCTAACAGCATATATCCTTAAAACCTTATATTTCGGGAGACATTCAAGTGTGCGTGAGCTTGCGATAATGGTTTTAATGGCTTACCTATCTTACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACAGTTTTCTTTTGTGGAATTATCATGTCGCACTATGCATGGCATAACGTGACTGATAGTTCGAGAATTACCACAAGGCATGTATTTGCAATGATGTCGTTCGTTGCTGAAACTGCAATATTTCTTTATGTGGGCATGGATGCTCTTGACATTGAGAAGTGGAAGATAACTAAATTAAGCTTGTGGAAGTTGCTTGGTACATATACTGCCATAGTTTTCTTGATTTTGCTTGGTCGTGCTGCCTTTGTATTTCCCATGTCTGCTATATCTAATTACTTCATTAAGCGTGAAGATAGATCATCGTCGCCTTCTATGATCTCATTTAAAGAACAGATCATTATATGGTGGGCTGGACTGATGAGAGGAGCTGTGTCTATTGCTCTGGCTTTCAAACAGTTCACATATTCCGGGGTTACAGTGGATCCAACCCATGCAACAATGATTACCAACACCACAATTGTTGTACTCTTCACCACAGTGGTATTTGGGTTTCTGACAAAGCCGCTCATAAGATGTCTGCTTCCTCCTAACCAAGCAAGTAGCAGTGCAAGCAACTCCAGACCAAAGTTCACTGAAGAGGACATAACTCTCCCTTTACTCTCCATGGAAGAGTCTGCTGCAACGAATGTCCTCCGGGCCAAGGATAGTTTGTCAATGCTAATAGAGAGGCCTGTTTACACCATACATTTCTTTTGGAGGAAATTTGATGATTCCTACATGAGACCTATATTTGGAGGGCCTCGCCACAACCAACAACCTGGTGGTTCTGGTTGTTAG 1590 42.83 MGVFETVKNIGSDHAPVVPLALFVTVLCFSLVIGHLLEENRWVNESITAIIIGVVTGTIILVCSKGKNSHILTFNEEVFFMYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVVGVFISALIITAGSQWLFPRMGFHGLSARDYVAIGAIFSSTDTVCTLQVLHQEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITRLNKKTALHLLGDFCYLFSTSTVLGVTTGLLTAYILKTLYFGRHSSVRELAIMVLMAYLSYMLAELLELSGILTVFFCGIIMSHYAWHNVTDSSRITTRHVFAMMSFVAETAIFLYVGMDALDIEKWKITKLSLWKLLGTYTAIVFLILLGRAAFVFPMSAISNYFIKREDRSSSPSMISFKEQIIIWWAGLMRGAVSIALAFKQFTYSGVTVDPTHATMITNTTIVVLFTTVVFGFLTKPLIRCLLPPNQASSSASNSRPKFTEEDITLPLLSMEESAATNVLRAKDSLSMLIERPVYTIHFFWRKFDDSYMRPIFGGPRHNQQPGGSGC 529
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 37171102 37178916 - CcPI632755_09g022940.1 Cco09g2294 188751
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2294 529 Gene3D - 139 191 - -
Cco09g2294 529 Pfam Sodium/hydrogen exchanger family 34 442 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cco09g2294 529 NCBIfam sodium/hydrogen exchanger 3 21 452 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g2294 529 PANTHER SODIUM/HYDROGEN EXCHANGER 19 520 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Cco09g2294 529 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g2294 529 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g2294 529 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g2294 529 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0610 Cco-Chr9:5387198 Cco09g2294 Cco-Chr9:37171102 8.30E-158 dispersed
Cco09g0611 Cco-Chr9:5397902 Cco09g2294 Cco-Chr9:37171102 4.20E-134 dispersed
Cco09g2294 Cco-Chr9:37171102 Cco06g0554 Cco-Chr6:5972658 1.20E-165 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2294 - - - 0.0