Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g2294 | ATGGGAGTTTTCGAAACGGTGAAAAACATCGGCAGCGATCACGCCCCGGTCGTCCCCTTGGCGTTGTTCGTCACCGTTCTCTGTTTCTCTTTGGTTATCGGCCACTTGCTTGAAGAAAATCGATGGGTTAATGAATCCATCACCGCCATTATCATTGGAGTTGTCACTGGAACGATCATATTGGTCTGTAGCAAGGGGAAAAATTCTCATATCCTAACTTTTAATGAAGAAGTGTTCTTCATGTATCTTCTTCCACCAATAATCTTCAATGCGGGATTTCAAGTTAAAAAGAAGCAGTTCTTTCATAATTTCTTGACCATCATGCTGTTTGGTGTGGTTGGTGTTTTCATATCTGCACTTATTATAACGGCTGGCAGCCAGTGGCTGTTTCCAAGAATGGGCTTTCATGGTCTGTCGGCGCGGGACTATGTTGCTATAGGCGCTATCTTTTCATCCACGGACACAGTATGCACCCTGCAGGTACTACACCAAGAGGAAACACCTTTACTCTACAGCCTAGTCTTTGGGGAAGGAGTGGTGAACGATGCAACATCAGTTGTTCTCTTCAATGCAGTCCAGAAGATTGATATCACTAGGCTTAACAAGAAGACAGCCCTTCATCTTTTGGGAGATTTTTGTTACTTATTTTCAACTAGCACTGTCCTTGGAGTGACTACTGGGCTTCTAACAGCATATATCCTTAAAACCTTATATTTCGGGAGACATTCAAGTGTGCGTGAGCTTGCGATAATGGTTTTAATGGCTTACCTATCTTACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACAGTTTTCTTTTGTGGAATTATCATGTCGCACTATGCATGGCATAACGTGACTGATAGTTCGAGAATTACCACAAGGCATGTATTTGCAATGATGTCGTTCGTTGCTGAAACTGCAATATTTCTTTATGTGGGCATGGATGCTCTTGACATTGAGAAGTGGAAGATAACTAAATTAAGCTTGTGGAAGTTGCTTGGTACATATACTGCCATAGTTTTCTTGATTTTGCTTGGTCGTGCTGCCTTTGTATTTCCCATGTCTGCTATATCTAATTACTTCATTAAGCGTGAAGATAGATCATCGTCGCCTTCTATGATCTCATTTAAAGAACAGATCATTATATGGTGGGCTGGACTGATGAGAGGAGCTGTGTCTATTGCTCTGGCTTTCAAACAGTTCACATATTCCGGGGTTACAGTGGATCCAACCCATGCAACAATGATTACCAACACCACAATTGTTGTACTCTTCACCACAGTGGTATTTGGGTTTCTGACAAAGCCGCTCATAAGATGTCTGCTTCCTCCTAACCAAGCAAGTAGCAGTGCAAGCAACTCCAGACCAAAGTTCACTGAAGAGGACATAACTCTCCCTTTACTCTCCATGGAAGAGTCTGCTGCAACGAATGTCCTCCGGGCCAAGGATAGTTTGTCAATGCTAATAGAGAGGCCTGTTTACACCATACATTTCTTTTGGAGGAAATTTGATGATTCCTACATGAGACCTATATTTGGAGGGCCTCGCCACAACCAACAACCTGGTGGTTCTGGTTGTTAG | 1590 | 42.83 | MGVFETVKNIGSDHAPVVPLALFVTVLCFSLVIGHLLEENRWVNESITAIIIGVVTGTIILVCSKGKNSHILTFNEEVFFMYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVVGVFISALIITAGSQWLFPRMGFHGLSARDYVAIGAIFSSTDTVCTLQVLHQEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITRLNKKTALHLLGDFCYLFSTSTVLGVTTGLLTAYILKTLYFGRHSSVRELAIMVLMAYLSYMLAELLELSGILTVFFCGIIMSHYAWHNVTDSSRITTRHVFAMMSFVAETAIFLYVGMDALDIEKWKITKLSLWKLLGTYTAIVFLILLGRAAFVFPMSAISNYFIKREDRSSSPSMISFKEQIIIWWAGLMRGAVSIALAFKQFTYSGVTVDPTHATMITNTTIVVLFTTVVFGFLTKPLIRCLLPPNQASSSASNSRPKFTEEDITLPLLSMEESAATNVLRAKDSLSMLIERPVYTIHFFWRKFDDSYMRPIFGGPRHNQQPGGSGC | 529 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 37171102 | 37178916 | - | CcPI632755_09g022940.1 | Cco09g2294 | 188751 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g2294 | 529 | Gene3D | - | 139 | 191 | - | - | |
| Cco09g2294 | 529 | Pfam | Sodium/hydrogen exchanger family | 34 | 442 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Cco09g2294 | 529 | NCBIfam | sodium/hydrogen exchanger 3 | 21 | 452 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco09g2294 | 529 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 19 | 520 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Cco09g2294 | 529 | PRINTS | Na+/H+ exchanger signature | 147 | 157 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco09g2294 | 529 | PRINTS | Na+/H+ exchanger signature | 107 | 115 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco09g2294 | 529 | PRINTS | Na+/H+ exchanger signature | 78 | 89 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco09g2294 | 529 | PRINTS | Na+/H+ exchanger signature | 92 | 106 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco09g0610 | Cco-Chr9:5387198 | Cco09g2294 | Cco-Chr9:37171102 | 8.30E-158 | dispersed | |
| Cco09g0611 | Cco-Chr9:5397902 | Cco09g2294 | Cco-Chr9:37171102 | 4.20E-134 | dispersed | |
| Cco09g2294 | Cco-Chr9:37171102 | Cco06g0554 | Cco-Chr6:5972658 | 1.20E-165 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g2294 | - | - | - | 0.0 |