Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g2296 ATGCCTGAGAAAGAGAGCCACAATGTTGTTACAGAGCCTCGTTTGGTAGCTAGAAAGTTTCTGGCTAGGCCTCAGCATGAAGGGTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTTGACCCTTTTCTAGTTTTGGATGAATTTTCAGTTACTGCCCCAGCTGGGTTCCCAGATCATCCACATAGAGGATTTGAGACAGTGACATACATGCTGCAGGGAAGTGTGACACATGAAGATTTTGAAGGGCACAAGGGAACAATAGGAGCAGGTGACTTGCAATGGATGACTGCAGGTAGAGGAATTGTACATTCAGAAATGCCTGCAGCCCAAGGGACCCAAAAGGGCCTCCAACTATGGATCAACCTCTCTTCCAAGAACAAAATGATTGAGCCAAATTACCAAGAAGTTTCAAGCAAGGGAATTCCAGAAGCTTCAAAAGATGGAGTGAGAGTGAAAGTCATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCTACACAAGAACTCCAACCATGTACTTGGACTTCACTCTCAAGCCAAAAGCTCATCTCCAGCAGCTGATCCCATCGTCATGGAACGCATTCGTGTACATTCTTGAAGGAGAAGGTGTCTTCGGCAGCTCAAAGGCGACATCAACAACAGCACATAACCTACTTCTTCTTGGTTTCGGGGATGTTTTAGAGGTTTGGAATAAGTCAGCCAAGCCTCTTAGGTTCATTTTGGTAGGAGGTGAACCATTGAGTGAGCCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACAATTGATGATTTTGATAACTATACCAATGGATTTGAGAAAGCAAGGCATTGGAGATCCGAAGCTGGAATTTCTCTTGGGTTCTAA 906 44.59 MPEKESHNVVTEPRLVARKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKNKMIEPNYQEVSSKGIPEASKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKAHLQQLIPSSWNAFVYILEGEGVFGSSKATSTTAHNLLLLGFGDVLEVWNKSAKPLRFILVGGEPLSEPVVQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSEAGISLGF 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37210392 37213837 + CcPI632755_09g022960.1 Cco09g2296 188753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g2296 301 CDD cupin_pirin_N 33 128 - -
Cco09g2296 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Cco09g2296 301 Pfam Pirin 33 126 IPR003829 -
Cco09g2296 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Cco09g2296 301 PANTHER PIRIN-RELATED 7 294 IPR012093 -
Cco09g2296 301 CDD cupin_pirin_C 176 252 - -
Cco09g2296 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Cco09g2296 301 PIRSF Pirin 12 292 IPR012093 -
Cco09g2296 301 FunFam pirin 27 163 - -
Cco09g2296 301 Gene3D Jelly Rolls 148 253 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1747 Cco-Chr7:31571002 Cco09g2296 Cco-Chr9:37210392 4.30E-118 dispersed
Cco09g2296 Cco-Chr9:37210392 Cco10g0449 Cco-Chr10:5301700 2.90E-132 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g2296 K06911 - csv:101216351 589.726